Xiphias gladius (swordfish): 120806177
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Entry
120806177 CDS
T07311
Symbol
chd1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1 isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
xgl
Xiphias gladius (swordfish)
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xgl03021
]
120806177 (chd1)
03036 Chromosome and associated proteins [BR:
xgl03036
]
120806177 (chd1)
Transcription machinery [BR:
xgl03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
120806177 (chd1)
Chromosome and associated proteins [BR:
xgl03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
120806177 (chd1)
SLIK complex
120806177 (chd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Helicase_C
Chromo
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
120806177
NCBI-ProteinID:
XP_040012953
LinkDB
All DBs
Position
LG20:complement(903937..933507)
Genome browser
AA seq
1836 aa
AA seq
DB search
MAPWLDDTKVNHVEHSTTGCQGEVYILDFNMAGRSEDESVSNSSGESSNSEDESGSGSGS
ASGSGSGSSSSSSSSSSQSGSSDSGSGSESGSQSDSDTEKSKEKMEPPNKSNIDGAEFWK
SNPSILAVQRSAMLRKQQLQQQQQQQQQQQRQSSSNSGSDEDSSSSDESDSSSGSKRRRN
SASSDSGSGSGSGSGSGSDSSAEDNSDETASDYEPGHKIKSRKPPTKMNFRNGKKSSTQR
KKAKKCSSSEDEDDNYKKVASAGPRRQATVNISYKEDEELKTDSDDVVEVLGEDVPQPEE
DEFETLERVMDSRIGRKKATGSATTVYAVEADGDPNSNFNPNKEAGEIQYLIKWKNWAHI
HNTWETEETLKLQNVKGMKKLDNFKKKEQEKKKWLKAASPEDIEYFNCQEELMDDLHSQY
QLVERIIGHSNQKSAAGYPDYLCKWQGLPYSECSWEDGALIAKKFQKCIDDYMSRNQSKT
IPFRDCKVLKQRPRFVPMKKQPAYIGGDGLELRDYQLDSLNWMAHSWCKGNSCILADEMG
LGKTIQTICFLNYMFNEHQLYGPFLLVVPLSTLTSWQREIQLWAPQMNVVVYLGDISSRN
MIRTHEWMHVHSKRLKFNILLTTYEILLKDKSFLGSVNWAFIGVDEAHRLKNDDSLLYKT
MIDFRSNHRLLITGTPLQNSLKELWSLLHFIMPEKFHSWELFEEDHGKGRDSGYTSLHKE
LEPFLLRRVKKDVEKSLPAKVEQILRVEMSAIQKQYYKWILTRNYKALSKGTKGSTSGFL
NIMMELKKCCNHCYLIKPPEDNEFLNKAEALQQLIRSSGKLVLLDKLLVRLKERGHRVLI
FSQMVRMLDILAEYLRSRQFLFQRLDGSIKGEMRKQALDHFNAEGSEDFCFLLSTRAGGL
GINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKRQVNIYRLVTKGSVEEDIIERAKKK
MVLDHLVIQRMDTTGKTVLHTGAAPSSSAPFNKEELSAILKFGAEELFKEPEGEEQEPQE
MDIDEILKRAETRENDPGPSTVGEELLSQFKVANFSMMEDEEIDIDSERSHRSWDDIIPE
EQRRRMEEEERQKELEEIYMLPRMRNCAKQISFTAVEGRQSRNRRYSGSDSDSPSDRKRP
KKRGRPRTIPRENIKGFNDAEIRRFVKSYKKFGGPLERLDAIARDAELVDKSEHDLKRLA
ETVHNGCVRTLRENPCGPDKTSGGRRGKVKGPTFRISGVQVNAKLVISHEEELAPLHKAI
PSDPEERKKYMIPCHSKAAHFDIEWGKEDDSSLLIGIYEYGYGSWEMIKMDPDLNLTHKL
LPDDPDKKPQAKQLQTRADYLIKLLSKDLAKKEAQKQAGTANSRKRKPRSKKSKTLKPTK
TDEVMKSPSSDPPSDKRSDDEDEIKEEKEMAPVKPPSRRGRADRVVVKEEEDDDDEDDDE
EEEPEQEEVSSSGEREIKEKEIKKEGKKEKKEESWDIKESKEPKEKKETKPLEAVHKQEE
SMDKNEVKTEVRERTKKASDVPVHITASGENVPISEESEELDQRTFSVCKERMRPVKAAL
KQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLKEYSNPDQIKQWRKNLWIFVSKFTEF
DARKLHKLYKHAIKKRQENAQAMDQNTRSINTHSYKHTDVERLKDNSHQDESSRDSYSSE
RHQASGRYHESSSSKERHSSESHRKTTGGESRKRLYSSFSNGKDHRDRDHYRPDSRDRDR
QDRYYNDSKHRKLEEFRTSRDHRLDMKEYSHSDQRSSYRYHSDWQTEQRASASGPRSPRD
QRSPYDSRSPMGHRSPFDYSSDHKSTPEQIWSSRKT
NT seq
5511 nt
NT seq
+upstream
nt +downstream
nt
atggcaccctggctcgacgacacgaaggttaaccacgtggaacatagtactacaggttgt
cagggggaagtctatattttggacttcaatatggctggacgcagtgaagatgaaagtgta
agcaacagcagtggtgaatcaagtaattctgaggatgaatctggttctggatcaggctcc
gcatcggggtccggttcaggctccagttccagctcctccagcagcagcagccaatcagga
agcagtgactcaggaagtggctcagagtctggcagccagtcagactctgacacagagaaa
tccaaggagaagatggaaccgccaaataagtcaaacatcgacggagctgagttctggaag
tccaacccaagtatcctagctgtgcaaaggtctgctatgctcaggaaacagcagcttcag
cagcagcagcaacagcagcaacaacagcagagacagagctcctcaaatagtggatccgat
gaggactcgtcaagtagtgatgaatctgactcatcaagtggatccaaaaggagaagaaat
tcagcttcctctgactctggatcaggttctggatctggaagtggttctggatcagactca
tcagcagaggacaacagtgacgaaacggcatcagactatgagcctggtcacaaaataaaa
agcagaaaacctccaactaagatgaattttcggaatgggaagaaaagcagcacccagagg
aagaaagccaagaagtgctcttcttcagaggatgaggacgataactacaagaaagtagcg
tctgcgggaccaaggcggcaggctacagtgaacatcagctacaaggaggatgaggaactg
aagacggactcagatgatgtggtggaagttctcggtgaagatgtcccacagcctgaggaa
gatgagtttgaaacactggagagagtgatggatagcaggataggaagaaaaaaagcaacg
ggaagtgcaactactgtatatgctgtagaagcagacggggaccccaattccaacttcaat
cccaacaaagaggctggtgagatccagtatttgataaagtggaagaactgggcccatatc
cacaacacctgggagacagaggagacactcaagttgcagaacgtcaaaggcatgaagaaa
ctggacaatttcaagaagaaggaacaggaaaaaaagaaatggttaaaggcagcttcacca
gaggatatagaatatttcaattgtcaggaagaattgatggatgacctgcactctcagtac
cagttagtagagcgaatcataggtcattcaaaccagaagtcagcagctggttacccagac
tacctgtgcaagtggcagggcttaccatactcagagtgcagctgggaagatggcgctctg
attgcaaaaaagttccagaaatgcatcgatgactacatgagcagaaaccagtccaagacc
attccattcagagactgcaaggtgctgaaacagagacctaggtttgtacctatgaagaag
cagccagcttacataggaggtgatggactggagctcagagactaccagctagacagtttg
aactggatggcccactcctggtgcaaaggcaacagttgcatccttgctgatgagatgggt
ttagggaagaccatccagaccatctgcttcctcaactacatgttcaatgagcaccaactg
tatgggcccttcttgctggttgtgcctctctctacactaacctcttggcagagagaaatc
cagctctgggcccctcagatgaatgttgtggtctacctgggagacatcagcagcaggaac
atgatcaggacacacgagtggatgcatgtccatagcaagagactgaaatttaacatcctt
ctcacaacttatgagattcttctcaaagacaagtcatttttgggcagtgtcaactgggcc
ttcattggtgtggatgaggcgcaccgactaaagaatgatgactccctcctctacaagacc
atgattgacttcaggtccaatcacaggcttctgatcacagggacaccactgcagaactcc
ctgaaagagctctggtcactgctgcacttcattatgcccgaaaagtttcactcttgggag
ctgtttgaggaggaccatggtaaaggaagggactcaggctatactagtctgcacaaagaa
ctggaaccttttctactgcgcagagtcaagaaggatgtggagaaatcccttcctgccaaa
gtggagcagatcctccgagttgagatgagcgctatccagaaacagtattacaaatggatc
ctgaccaggaactacaaggctctgagtaaaggtaccaaaggcagcacatcaggtttcctg
aacataatgatggagctgaagaagtgttgtaaccactgttaccttatcaagccaccagag
gacaacgagttcctcaacaaagctgaagccctacagcaactgatccgcagcagtgggaag
ctggttctgttggacaaacttttggtgcgtttgaaggagcgaggccacagagttctcatc
ttctcccagatggtacggatgctggatatcctggctgaatacctgaggagccgacagttc
ctctttcagagattagatggctcgatcaaaggggagatgaggaagcaggcgttggaccat
tttaatgctgaggggtcagaggatttctgcttcttgttatcaacacgtgcgggtggtctg
ggtatcaatctggcatcggctgacacggtagtcatctttgactcagactggaacccccag
aatgatctgcaggctcaggccagagcccacaggatcggacagaaaagacaggtgaatatc
taccgtctggtgacaaagggctcagtggaggaggacatcattgagagggcgaagaagaaa
atggtgctggaccacctcgtcattcagaggatggataccacagggaaaactgtcctccat
actggtgctgctccctcaagttcagcacctttcaataaggaggagctctctgctatcctg
aagtttggtgctgaggagcttttcaaagagccagagggtgaggagcaggagcctcaggaa
atggacattgacgagatcctcaaaagagcggagaccagggagaatgaccctggaccctcc
acagtgggagaagaactgctgtctcagttcaaggtagccaacttctccatgatggaggat
gaggaaatagacatcgactctgagcgtagtcaccggagttgggatgacattattcctgag
gagcagaggaggaggatggaggaggaggagagacagaaggaactggaggaaatctacatg
ctgccacgcatgaggaattgtgccaaacagataagctttaccgctgttgagggccgacag
agcaggaacaggagatactctgggtctgatagtgactccccctcagaccgaaagaggcca
aagaaacgaggacggcctcggaccattccacgagaaaatatcaagggtttcaatgatgct
gagatccggaggtttgtcaagagttacaaaaaatttggaggaccattggaaaggttggat
gctattgctcgtgatgctgaacttgtggataagtctgaacatgacctgaaacgcttggca
gagacagttcacaacggctgtgtgagaacactaagagagaacccctgtggaccagacaaa
acgtcaggaggcagaagagggaaggtaaaaggccctacattcaggatttctggagtccag
gtgaatgccaaacttgttatctcccacgaggaagagctggctccacttcacaaggccatt
ccttctgacccagaggagagaaagaagtatatgattccatgccactcgaaggcagcacac
tttgacattgagtggggaaaggaggatgattccagcctcctcataggaatctatgagtac
ggttatggcagctgggagatgatcaagatggacccggacctcaatctcacacacaagctc
ctaccagatgaccctgacaagaagccacaggctaaacagctgcagaccagagcagactac
ctcatcaagttactgagcaaggacctggccaaaaaagaagcacagaaacaagcagggaca
gccaattcacggaagaggaaaccaagaagtaaaaaaagcaaaactctgaagccgacaaaa
acagatgaggtgatgaagagtccttcctcagatcccccatcggacaagaggtcagatgat
gaggatgaaattaaggaggaaaaggagatggcaccagtgaagccaccaagcagacggggc
cgagcagacagggtggtggtgaaggaggaggaggatgacgatgacgaggacgatgatgag
gaggaggagcctgagcaggaggaggtttcttcttcaggggagagggagatcaaggaaaaa
gagatcaaaaaagaaggcaaaaaggaaaagaaggaggaaagttgggacattaaagagtca
aaggagccaaaagagaaaaaagaaacaaagcctctggaggcagtacataaacaagaggag
agcatggacaagaatgaagtaaaaactgaggtacgagaacggacaaagaaagcctctgac
gtgccagtccatataacagcaagtggagagaatgtgccgatatctgaggagtctgaggaa
ctggaccagaggaccttcagtgtgtgtaaagagaggatgcggccggtgaaagcagcgctg
aagcagctggacagaccagagaaggggctgtcggagcgcgagcagctcgaacatacaaga
cagtgcctcataaagattggagaccacatcactgagtgtctgaaggagtattcaaatcct
gaccagatcaagcagtggagaaaaaacctgtggatatttgtttccaaattcactgagttc
gacgccaggaaactacataaactgtataagcatgcaatcaaaaaaagacaagagaatgcc
caggcaatggatcagaacactagaagtataaacacccacagctataaacatacagatgtt
gaaaggctgaaggacaactctcaccaggatgagagcagcagggacagctacagctcagaa
aggcatcaggcttcaggtcgatatcatgagagcagcagcagcaaggagcgacacagctca
gagtcccacaggaagaccacaggaggagagtccaggaaaagactgtactcctctttcagc
aatggcaaagaccaccgagacagagaccactacagaccagacagcagggacagagacaga
caggacagatactacaatgacagcaaacacaggaagctggaggaattccgcaccagcaga
gaccaccggctggacatgaaggagtattcccattcagaccagcgctcttcctaccgttac
cactctgactggcagacagagcagcgagcctcagccagcgggccccgctctccccgagac
cagcgctcaccctacgactcccgctcacccatggggcaccgctcacctttcgactactcg
tcagatcacaagagcacacctgagcagatctggagcagccgcaagacataa
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integrated database retrieval system
