Xiphias gladius (swordfish): 120806399
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Entry
120806399 CDS
T07311
Symbol
mtrex
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
xgl
Xiphias gladius (swordfish)
Pathway
xgl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120806399 (mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xgl03019
]
120806399 (mtrex)
03041 Spliceosome [BR:
xgl03041
]
120806399 (mtrex)
03009 Ribosome biogenesis [BR:
xgl03009
]
120806399 (mtrex)
03016 Transfer RNA biogenesis [BR:
xgl03016
]
120806399 (mtrex)
Enzymes [BR:
xgl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120806399 (mtrex)
Messenger RNA biogenesis [BR:
xgl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
120806399 (mtrex)
Spliceosome [BR:
xgl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
120806399 (mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
120806399 (mtrex)
Ribosome biogenesis [BR:
xgl03009
]
Eukaryotic type
Pre-60S particles
Helicases
120806399 (mtrex)
Transfer RNA biogenesis [BR:
xgl03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
120806399 (mtrex)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
120806399
NCBI-ProteinID:
XP_040013473
LinkDB
All DBs
Position
LG20:complement(17531623..17555127)
Genome browser
AA seq
1038 aa
AA seq
DB search
MADAFGDGLFSVFDDEQQTTTSKKLPASVAPETGKAVSKNGTDKDAGPSARVKREADSDG
GEEVVFGKKPRHEPVSANDLNLADFMPQVKVEQVETVEGCSHEVALPASDDYKPLKPRVG
KAAKEYPFILDPFQREAILCIDNNESVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSP
IKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMREVAWVI
FDEIHYMRDAERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVVYTD
YRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDSGSSSGGGGKWDPRG
RKGGTKGPSSVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVAKLDFNRDDEKRLVEEV
FNNAVDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFATE
TFAMGINMPARTVLFTSARKFDGKNHRFITSGEYIQMSGRAGRRGMDDRGIVIFMVDEKM
SPAVGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRALPGVVE
KIKKLEEQYHATEIPNEESVVTYFKIRQQLAKLGKEIQEFIQKPKYCLPFLQPGRLVKVK
NEEADFGWGVVVNFCKKSNVKTSTDSEPLYVVEVLVHCSKDSVKDAATEAAKPAVPGETG
EMQVVPVMLHLLTSISSVRLYIPKDLRPFDNRQLMLKSIQEVQKRFPDGVPLLDPIDDMG
IKDPALKKVIQKVEAFEHRMYSHPLHSDPNLESVYSLCEKKALIAADVRTAKRELKKART
VLQMDKLKCRKRVLRRLGFASPSDVIEMKGRVACEISSADELLLTEMVFNGLFNDLTVEQ
ATALLSCFVFQENASEMPKLTEQLAAPLRQMQECAKRIAKVSADAKLEVDEETYLNQFKP
HLMDVVYAWANGATFAQICKMTDVFEGSIIRCMRRLEEVLRQMCSAAKAIGNTELENKFA
EGITKIKRDIVFAASLYL
NT seq
3117 nt
NT seq
+upstream
nt +downstream
nt
atggctgacgcgtttggcgacggcttgttcagcgtgtttgatgatgaacaacaaacgacc
acaagcaaaaagttacccgcctctgtggctccggaaacagggaaagctgtaagtaaaaat
ggcaccgacaaggatgctggtccatctgcccgggtcaagagggaggcagacagtgacggt
ggcgaggaggtggtttttgggaagaaacctcgacatgagccagtctctgctaatgacctt
aaccttgcagactttatgccccaagtgaaggtggagcaagttgaaactgtggaaggatgc
tcacatgaggtcgctctgcctgccagcgatgactacaaaccgctgaaacctcgagtggga
aaagcagccaaggagtacccatttattctagatccgttccagcgtgaggccatcttatgt
attgacaacaatgagtctgtgcttgtgtctgcgcacacctctgctggcaagactgtctgt
gctgaatacgccatcgctctggccctcagagagaagcagagagtgatcttcaccagcccc
atcaaggctctttccaaccagaaatacagagagatgtacgaagagttccaggacgtggga
ctgatgactggcgacgtcaccatcaaccccaccgcctcctgcctcgtcatgacaacagag
atcctgaggagcatgctgtaccgaggctctgagatcatgagggaagtggcctgggtcatc
tttgatgagattcactacatgagagatgcagagcgcggtgtggtgtgggaggaaaccatc
attcttcttcctgacaacgtgcactatgtcttcttgtcagccaccatccccaatgccaga
cagtttgctgagtggatttgtcacctacataagcagccatgccacgtggtgtacacagac
taccgtcccactccactgcagcactacatcttcccagcagggggcgatggtctccatctg
gtggttgatgagaatggagacttcagagaggacaatttcaacacagctatgcaggtgctg
agagatgcaggcgattctgggagcagcagcggaggcggcggcaagtgggacccgagggga
cgaaaaggaggcaccaaaggtccatccagtgtgttcaagatcgtgaagatgatcatggag
aggaacttccagcctgtcataattttcagcttcagtaagaaagagtgtgaggcctatgca
ctgcaggtggccaaactggactttaacagagatgatgagaaacgtctggtggaggaggtg
ttcaacaacgcggtggactgtctttcagacgaagacaagaaactccctcaggtggagcac
gtactgccactgttgaagaggggaatagggatccatcacggaggcctgctgcccatccta
aaagagaccatagagattcttttctctgaaggcctgctcaaggccctgtttgccaccgag
acattcgccatgggcatcaacatgccagctcgcactgtgctcttcaccagcgcacgcaag
tttgatggcaagaatcatcgctttattacatcaggtgagtacatccagatgtccgggcgt
gctgggaggagaggaatggacgacaggggaattgttattttcatggtggatgagaagatg
agtccagctgtgggcaaacagctcctcaagggatcagcagaccctttgaacagtgccttc
cacctgacctacaacatggttctcaacttgctgcgtgtggaggagatcaacccagagtac
atgctggagaagtctttctaccagttccaacactacagggctctgcctggtgtagtggag
aaaataaaaaagttggaggagcagtaccacgccactgagatacctaatgaagagagcgtt
gtcacttactttaagatcagacagcagctggccaaactgggtaaagagatacaagagttc
atccagaaacccaaatactgcctgcccttcttgcagcctggacgacttgtcaaggtaaaa
aatgaagaggctgactttggctggggagttgttgtaaacttttgcaagaagtctaacgtg
aagaccagcacagactcagagccactgtatgtggtggaggttttggtccactgtagtaag
gacagtgtaaaagatgctgcaaccgaagctgctaaacctgctgttcccggggagactgga
gagatgcaggtggtcccagtgatgctgcatctcctgacttccatcagctcagttcgtctt
tacatccccaaagacctgaggccctttgacaacagacagctaatgctcaagtctatacag
gaggtgcagaagcgtttcccagatggcgttcctctgcttgaccccatagacgacatgggc
atcaaagaccctgcactgaagaaagtcattcagaaagtggaggcctttgagcatcgcatg
tactcccaccccctgcacagtgaccctaacttggaatctgtatattctctctgtgagaag
aaagctctgatcgcagcagatgttcgaacggccaagcgagagctgaagaaagctcggacc
gtcctgcagatggacaagctgaagtgcaggaagagagttctgcgacgccttggcttcgcc
agcccctccgacgtgatcgagatgaaggggcgcgttgcctgtgaaatcagcagtgctgac
gagctcctgctgacggagatggtgttcaacggtctcttcaacgatctgacggttgaacaa
gccaccgccctgctgtcctgcttcgtcttccaggagaatgccagtgagatgccaaaactg
actgaacaactagctgcacccctgagacaaatgcaggagtgtgcaaagcgcatagccaag
gtgtctgcagacgccaagctggaggtggacgaggagacctatctaaaccagtttaagccc
cacctgatggatgtggtctacgcctgggctaacggcgccacgtttgctcagatctgcaag
atgaccgacgtttttgaagggagcatcatccggtgcatgcgccgcctggaggaggtgctg
agacagatgtgctctgcagccaaggccataggcaacactgagctggaaaacaagtttgct
gaaggcataacgaagatcaagagagacattgtctttgctgccagtctctacctataa
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integrated database retrieval system
