Xiphias gladius (swordfish): 120806526
Help
Entry
120806526 CDS
T07311
Name
(RefSeq) 3'-5' RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
xgl
Xiphias gladius (swordfish)
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xgl03041
]
120806526
Enzymes [BR:
xgl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120806526
Spliceosome [BR:
xgl03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
120806526
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
OB_NTP_bind
R3H
HA2_C
Helicase_C
DEAD
Ank_2
HA2_N
AAA_19
Ank_5
Ank
Ank_4
ATPase
nSTAND3
AAA_30
AAA_22
Ank_3
SRP54
AAA_7
AAA_23
PhoH
AAA_16
ResIII
Sigma54_activ_2
T2SSE
HerA_C
Motif
Other DBs
NCBI-GeneID:
120806526
NCBI-ProteinID:
XP_040013728
LinkDB
All DBs
Position
LG20:complement(2316623..2351357)
Genome browser
AA seq
1412 aa
AA seq
DB search
MTGCRLFCIMSNIGTASQKPTKSQKASCRGSISNGLKEIHIDEEVKIAVNLSLERFRYSD
QREMEFPSSLSSTERAFIHRMAQSLGYVSKSKGKGPNRFLTIRKKDGSDKPRPTMPLTLS
HNSLYFIRSLLQRFPISNKERTDMQPSNKSGMSVPAEHDISCDRNRASGRLNNGIPMVPR
RRNPSELDSFRRSLPVQERQEEIIQLVSGNRVVLVVGETGSGKTTQIPQFLLDECSKNGE
PCRIFCTQPRRLAAIAVAERVAAERGESVGQTVGYHIRLESRVSPKTLLTFCTSGVFLRT
LMAGDASLTTVTHVIVDEVHERDGLTDFLLTKMRDVLQKIPTLKLILSSAALDTALFLQY
FGSCPVIHLKGRQFEVQDLFLEDILRLTGFNNKDVGKYKEETQRKEKKQKRLKEWCKAVE
NSCVEEKQRSPVSVPGFLQDSSSLDREDSTFNKPNENDSEQLEPWLLKEMDSCISSIFLS
EEQDAFIQLFNLILYESVNVDYTHSETGATPLMVAAGRGFLTQMEQLLKMGADINMKASN
GWTALDFAKHFQQTDAVDLLKSSIPLREVSSLDESTLVQCGSAELSTEEQELLKLYHHSF
DDEWVDLDLIMDLLHNICSTTCDGAVLIFLPGYDEIVALRDRILYDDKRFYTHSERFQVF
TLHSDMQTLDQKKAMKTSPPDVRKIILSTNIAETSITINDVVFVIDSGKVKEKSFDTLSH
VSMLKTVWISKASALQRKGRAGRCRPGICFHLFSRLRFNNMLEFQVPQLLRMPLQELCLQ
TKLLAPSSCPVAEFLSKAPQPPPAHAIRNAVHMLKTIDAMDQYEDLTDLGYHLADLPIEP
HLGKMVLCAVVLKCLDPILTIACTLAYRDPFILPAQGSQKRAALHCRKRFTSSTFSDHMA
LLRAFQAWQKARSDGWERVFCEKNFLSQATMDMILGMRTQLLGQLRAIGFVRARGGSDIR
DVNLNSENWAVVKAALVAGMYPNLVHVNQETSLLSSNREKKVHFHPTSILSQSQFKENSP
AKSAQALPTDWLIYDEMSRGHRMASVRCCSMVTPITVAIFGGCAKLPSPSLQEPAVQKAT
ESPLDDISDSETEDLAEMRIDDWLVFQLDREAAGLVFELRQKWQNLFIKRIRCPSKPWSQ
QDEAIIRTLVSVLAAEEQGAGLQQPSGIGQRPRPMSSEEGPQACVKNSKNSPQLPTNTAH
DKSWRMPAAPGLLQMKAHSRDDASLPISQLSDDPHSSISSCCVTSGSPSDTTFPSSSGKF
SKPVSPQLVFSSVRYFIMKSSNVRNIEISQQKGIWSTTPSNESKLTKAFLENNLIILIFS
VQGSGHFQGYAHMTSVISQESCQDWGFMGLGGVFSVEWIHKESLPFQCTQHILNPWNDNK
KVQISRDGQELEPQAGSQLLLLWKRNSGNQVL
NT seq
4239 nt
NT seq
+upstream
nt +downstream
nt
atgaccgggtgccgtttgttttgcatcatgtcgaatattggtacagcctcacagaaacca
accaagagccagaaggcatcatgtcgtggttccatctccaacggcctcaaagaaattcac
atcgatgaagaagtcaagatagcagtgaacctctctctggagaggtttcgctacagtgac
cagagagagatggaatttccctcctccttgtccagtacggagagggctttcattcatcga
atggcacagtccctgggttacgtttctaagagcaaagggaaaggaccaaatcgctttctc
accatcaggaagaaggatggttcagacaaacctcggcctaccatgcccctcacactctcc
cacaattccttatatttcatccgcagcctgcttcagaggtttcccatcagcaataaggaa
cgcacagacatgcagcccagcaacaaaagtggcatgtctgtgcctgcagagcatgacatc
agttgtgacagaaacagggcaagcggacgcttaaacaatggcattcccatggtgcctcgg
aggaggaatccatcagaactagacagttttcgacgctccctacctgttcaagaacgccag
gaggagatcattcagctcgtcagtggaaacagggtggtgctggtggtgggagagactggc
tctggaaaaactacacagatcccacagttcctgctggatgagtgcagcaagaatggagag
ccatgtaggatcttctgcactcagcccagacgcctggctgccattgctgttgctgaaaga
gtggcagcagagagaggagagagtgtgggccagactgttggctatcacatcagactggag
agcagggtctctccgaagacattgctgaccttttgcaccagtggagtgttcctcagaaca
ctgatggctggggatgccagcctgacaactgtcacacatgtcattgtggacgaggtgcac
gagcgggatggtctgactgacttcctgctcactaagatgcgggatgtgcttcaaaaaatc
cccactctgaaactgatcctgtctagtgcagctctggatacagctctgttccttcagtac
ttcggctcctgccctgttatccacctcaaaggaagacagtttgaagtacaggatctcttt
ctggaggacattctgaggctgacgggctttaacaataaggacgtggggaaatacaaggaa
gagacacagagaaaggagaagaagcagaaacgtttgaaagagtggtgtaaggcagtggag
aacagttgtgttgaggagaaacagaggagccctgtgtctgtcccaggctttctccaggac
agcagctcattggacagagaggacagcactttcaacaagccgaatgagaatgactcagaa
cagctggagccgtggctgctgaaggagatggactcctgcatttccagcattttcctcagt
gaagagcaggatgctttcattcagctcttcaacctcatcctgtatgaaagtgttaacgtg
gactacacgcacagcgaaacaggggctacgcctttgatggtggcagcaggtcgagggttc
ctcacgcagatggagcagctgctcaaaatgggggctgatatcaacatgaaagcatctaat
ggatggacagccttagactttgccaaacacttccagcagacagatgctgtggatctactc
aaatcctccattcctttgagagaggtgagtagcctggatgagtccactctggtgcagtgt
ggcagtgcagagctgagcactgaagagcaggagctgctcaaactgtaccaccacagcttt
gatgatgagtgggtggacctggacctcattatggatctgctgcataacatctgctccacc
acctgtgacggtgctgtcctgattttccttcctggatatgatgagatagtagcactcagg
gaccgcatcctgtacgacgataagagattctacacccactctgagaggttccaggtgttc
actctacattcagacatgcagactctggaccagaagaaagccatgaagacctctcctcct
gatgtcaggaagataattctttccactaacattgcggagacgagcattaccatcaacgat
gtggtgtttgtcattgattcaggaaaggtcaaagagaagtcctttgacactctcagtcat
gtatctatgttgaagacagtttggatctcgaaagccagcgctctgcaaaggaaaggaaga
gctgggcgctgcagaccggggatttgcttccacctcttcagtcgactcaggttcaacaac
atgctggaattccaggttccacagctgctacggatgccactgcaggaactgtgtctgcag
accaaactgctggctccctcatcctgtccagtggctgaattcttgtccaaagctccacag
cctcctcctgcacatgccatcaggaacgctgtgcacatgcttaagacaatagatgctatg
gaccagtatgaagacctgactgatctgggctaccatctggctgatctacctattgagccc
cacctgggcaagatggttctgtgcgccgtggtactcaagtgtctggaccccattctaacc
attgcctgtacgctggcctatcgtgaccctttcatccttcccgcccagggctctcagaaa
agagctgcactacactgccgcaagcgtttcacttccagcaccttcagtgaccacatggcc
ctgctgagagccttccaggcatggcagaaggcccgcagtgatggctgggagagagtcttc
tgcgagaagaacttcctgtcccaggccaccatggacatgatacttggcatgaggacacag
ctgctgggacagctccgtgctattggttttgtgcgggcccgtggaggcagtgacatccgt
gatgtgaatctgaattctgagaactgggccgtggtgaaggcagccctggtggctggcatg
tatccaaacctggtccatgttaaccaggagacctccctgctctctagtaacagggagaag
aaggtccattttcatcccacttctatcctgagccagtcccagttcaaggagaacagccca
gccaaatcagcccaggcccttcccacagactggttgatctacgatgagatgagccgaggc
cacaggatggccagtgtccgctgctgctctatggtgactccaatcactgtggccattttt
ggaggttgtgccaagctacccagcccctccctgcaagaacctgctgtacagaaagcaact
gaaagtccattggatgacatcagtgacagtgagacagaggacctagctgaaatgaggata
gacgactggctcgtcttccagttggacagagaggctgcgggactagtgtttgaactgagg
cagaagtggcaaaatttgttcatcaagaggatccgttgtccttcaaagccctggtctcaa
caggacgaggccatcatccggaccctggtttctgtactagcagcagaggagcagggagca
ggcctgcagcagccctcagggattggccagcggccccggcccatgtcatcagaagagggg
ccccaggcctgtgtgaagaactccaagaacagcccccagctacccaccaacaccgcccat
gacaagtcttggcggatgccagcagccccaggcctgcttcagatgaaagcccacagcagg
gatgacgcctcactgcccataagtcagctttctgatgaccctcactccagtatttcttcc
tgctgtgtgacctcgggcagtccctctgacaccacctttccctcctcctcaggaaagttt
tcaaagccagtgtcccctcagctggtcttttcatcagtccggtacttcatcatgaagagc
agcaatgtcaggaacatagaaatttctcagcagaagggtatctggtccaccacaccaagc
aatgagagcaaactgaccaaggccttcctggagaataacctcatcatcctcatcttctct
gttcagggctctggacacttccagggctacgctcacatgacatcagtcatcagtcaggaa
agctgccaggattggggcttcatgggtctgggaggggttttcagtgtcgagtggatccac
aaggagagtcttccattccagtgcacccaacacatccttaacccatggaacgacaacaag
aaggtccagatcagcagggacggacaggaattagagccccaggcaggtagccagctactg
ttgctgtggaagagaaactctgggaatcaggttctataa
DBGET
integrated database retrieval system
