Xiphias gladius (swordfish): 120806543
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Entry
120806543 CDS
T07311
Symbol
ddx55
Name
(RefSeq) ATP-dependent RNA helicase DDX55
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
xgl
Xiphias gladius (swordfish)
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
xgl03009
]
120806543 (ddx55)
Enzymes [BR:
xgl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120806543 (ddx55)
Ribosome biogenesis [BR:
xgl03009
]
Eukaryotic type
Pre-60S particles
Helicases
120806543 (ddx55)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
CTT_SPB4
Cas3-like_C_2
SBF_like
AAA_19
Helicase_C_2
YbjM
Motif
Other DBs
NCBI-GeneID:
120806543
NCBI-ProteinID:
XP_040013759
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Position
LG20:complement(22684772..22692769)
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AA seq
601 aa
AA seq
DB search
MDNTTDGTWDSLPVKLNEGILQTLDELKFTHMTPVQSACIPLFMSNKDVAAEAVTGSGKT
LAFVIPIIELLLKREEKLKKMQVGALVITPTRELALQISEVMGQFIQTFPQFTQILLIGG
TNPIEDVEKFKDQGANIVIATPGRLEDMFRRKSDGLDLASSVKSLDVLVLDEADRLLDMG
FEASLNTILSYLPKQRRTGLFSATQTQELEKLVRAGLRNPVRITVKEKGVAATATQKTPS
RLSNYYTILRAEDKFNSLVAFLRQHKHEKHLVFFSTCACVEYYGRALETLVKKVNVCCIH
GKMKNKRNKIFADFRTLKSGILVCTDVMARGIDIPDVNWVLQYDPPSSASAFVHRCGRTA
RIGNQGNALVFLLPMEESYVNFLSINQKCPLQRMTPIGDVVDVLSKVKAMSLADRAMFDR
GMRAFVSYVQAYAKHECSLIFRIKDLDFASLARSFALLRLPKMPELRGKTFPDFIETTVD
TDTIRYKDKNREKQRQKMLKEKESAPLPRKTFIRNEAWSKQKARKDRKKKRSAKRKHNES
LLGSDVDDEDMKELLNDTRLLKKLKKGQISEEDFEKQITSGPKSKHKTEGPSHDSSGEED
A
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atggacaatacgacagacgggacgtgggacagtttacctgtcaaacttaacgaggggatt
ttacaaacgctcgatgaactgaaattcacacacatgacacctgtacagtccgcctgtatc
ccgctgttcatgagcaacaaagatgtggccgcagaggcggtgaccgggagtggaaagacg
cttgcgttcgtcattcctatcatagaactgctcctgaagagagaagagaagctgaagaag
atgcaggtcggcgccctggtgatcactcccacaagagaactggccctccagatcagcgaa
gtgatggggcagtttattcagacgtttccacagttcacgcagattttactgattggtggc
acaaacccaatagaggatgtggagaagttcaaggatcagggggcaaacattgtgatcgcg
actcccggccgtctggaggacatgttcaggaggaagtcagatgggctggacttggccagc
tcagtcaagagtctggatgtgctggttctcgacgaggccgacaggctgctagacatgggc
tttgaggccagtctgaacaccatcttgagctacctgcctaaacagaggcgtacaggcttg
ttttcagccactcagacacaggagctggaaaaactggtgagagccggcctcaggaaccca
gtgcggatcaccgtcaaagagaaaggcgtggctgccaccgccacccagaaaaccccctct
aggctctccaactactacaccatacttagagccgaggacaagttcaacagcctggtggcg
tttctaaggcaacacaagcatgagaagcatctggtcttcttcagtacatgtgcgtgtgtg
gagtactacggtcgagctctggagacgctggtcaagaaggtcaacgtctgctgcatccac
ggcaagatgaaaaataaacgcaacaagatctttgccgactttcggaccctgaaaagtggg
atcttggtgtgtacagatgtcatggccagaggcatcgatatccctgatgttaactgggtg
ctgcagtatgatcctcccagtagtgccagtgccttcgtacatcgatgtgggcgtacagca
cgtatcggtaatcagggcaatgccctcgtcttcctgctgccaatggaggaatcctacgtc
aatttcttgtccatcaaccagaagtgcccgctccagaggatgacccctataggtgatgtt
gtggatgtgctgtccaaagtgaaggccatgtctctggcggaccgtgccatgtttgacagg
ggcatgagggccttcgtctcctacgtccaggcctacgccaaacacgaatgtagtctcatc
ttcaggatcaaagatctggactttgcctccttagcccgcagctttgccctccttcgcctg
ccgaagatgcccgaactgagagggaaaacgttccccgatttcattgagacgacagtggac
acagataccattcgctacaaggacaagaaccgggagaaacagagacagaagatgctgaaa
gagaaagaaagcgctccccttccaagaaagacttttataaggaacgaggcctggtccaaa
cagaaagccaggaaggatcgcaagaaaaagaggtcggccaagaggaagcacaatgagtct
ctgctgggctccgacgtggacgacgaagacatgaaagagcttttaaatgacactcgtctc
ctcaagaaactgaagaaagggcaaatcagcgaggaggactttgagaaacagataacgagt
ggaccaaagtcaaaacataaaaccgaaggaccatcacatgacagctcaggtgaagaggat
gcgtga
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