Xiphias gladius (swordfish): 120806849
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Entry
120806849 CDS
T07311
Symbol
thbs4b
Name
(RefSeq) thrombospondin-4-B
KO
K04659
thrombospondin 2/3/4/5
Organism
xgl
Xiphias gladius (swordfish)
Pathway
xgl04145
Phagosome
xgl04510
Focal adhesion
xgl04512
ECM-receptor interaction
xgl04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120806849 (thbs4b)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
120806849 (thbs4b)
09144 Cellular community - eukaryotes
04510 Focal adhesion
120806849 (thbs4b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
120806849 (thbs4b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xgl04131
]
120806849 (thbs4b)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
xgl04147
]
120806849 (thbs4b)
00536 Glycosaminoglycan binding proteins [BR:
xgl00536
]
120806849 (thbs4b)
Membrane trafficking [BR:
xgl04131
]
Endocytosis
Phagocytosis
Opsonins
120806849 (thbs4b)
Exosome [BR:
xgl04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
120806849 (thbs4b)
Exosomal proteins of colorectal cancer cells
120806849 (thbs4b)
Exosomal proteins of bladder cancer cells
120806849 (thbs4b)
Glycosaminoglycan binding proteins [BR:
xgl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120806849 (thbs4b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
COMP
EGF_CA
EGF_3
cEGF
DUF7630
EGF
Motif
Other DBs
NCBI-GeneID:
120806849
NCBI-ProteinID:
XP_040014269
LinkDB
All DBs
Position
LG20:17849199..17866366
Genome browser
AA seq
940 aa
AA seq
DB search
MGVWTALILTLQPLLQLCLHVEAQALVYDLLTSPDCLPDLLQGGLAEQGVNEAFILTSFK
LQPKTGTTVFGLYNPGDNSKYFEFTVMGKLNRAVLRYLRSDKRMSSVTFNNLVLADGQQH
RLLFHLRGLQQQGPGGVELHLDCRLVETVRDLPAAFQGLPAGYGMVELKTMQAREQENLE
ELKLVVGDSFENVASLQDCHFQQRDSVQTLGVNTKQLSNQMLELTKVINELKDVLIQQVK
ETSFLRNTISECQACGLGGTEVVKPRCAPGVCFHDDMCTETADGVECGPCPDGYTGDGFN
CDDVDECQFNPCFPGVKCVNTAPGFRCDACPLGYTGQPVEGVGVLFAQTNKQVCDDIDEC
KGPDNGGCTANSVCHNSVGSYHCGSCKSGFTGDQVKGCKPEISCSNSLTNPCDINAQCYG
ERDGSVTCQCGIGWAGNGYLCGKDTDIDGYPDEKLKCKDLSCRKDNCVYVPNSGQEDADR
DGHGDACDDDADGDGIPNEQDNCWLKPNVDQRNSDKDSHGDACDNCRMVENPDQRDTDSD
GKGDACDDDMDGDGLKNFLDNCQRVKNRDQLDRDGDGVGDACDSCPDIPNPNQSDVDNDL
VGDSCDTNQDSDGDGHQDTKDNCPFVINSSQLDTDKDGLGDECDDDDDNDGIPDIMTPGP
DNCRLVPNPDQTDDNGDGVGDVCESDFDQDKVIDRIDNCPENAEVTLTDFRAYQTVVLDP
EGDAQIDPNWVVLNQGMEIVQTMNSDPGLAVGYTAFSGVDFEGTFHVNTVTDDDYAGFIF
GYQDSSSFYVVMWKQTEQTYWQATPFRAVAEPGIQLKAVKSRSGPGEHLRNSLWHTGDTN
DQVRLLWKDPRNVGWKDKVSYRWYLQHRPQVGYIRARFYEGTELVADSGVTIDTTMRGGR
LGVFCFSQENIIWSNLKYRCNDTIPEDFQEFSTQHGTDSL
NT seq
2823 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtgtggacagccctgattctgaccttgcagccgctattacagctgtgcttacac
gtggaagcccaggctttagtctatgatctgctcacctcacctgattgcctgccagacttg
ctgcaggggggtctggctgagcaaggggtgaatgaggctttcatcctaacctccttcaag
ttgcaacccaagaccggaaccactgtgtttggcctgtacaacccaggggacaacagcaag
tactttgagttcactgtgatggggaagctcaacagagctgtgttacggtacctgcggagt
gacaagaggatgagctcggtaaccttcaacaatctggtgctggcagacggccaacagcac
cgactgttgttccacctgagggggcttcagcagcaggggccaggcggggtggagctgcat
ctggactgcaggctcgtggagacggtcagggatctccctgctgccttccagggtttgcca
gcaggctatggtatggttgagctgaagaccatgcaagccagagagcaggagaatttagaa
gagctgaagttggtggttggagactcttttgagaatgttgcttcattacaagactgccat
ttccagcaaagagactccgtccaaactctgggggtcaacacgaagcagctgtcaaatcaa
atgctggagttaacaaaggtgataaatgagctgaaagatgtcctcattcagcaggtcaag
gagacctcatttctcagaaacaccatctcagagtgtcaggcctgcggcctgggaggaact
gaggtggtgaaaccacggtgtgccccaggtgtctgtttccatgatgatatgtgcacagag
acagcagatggtgttgagtgtggaccctgtcctgatgggtacaccggggatggtttcaac
tgtgatgatgtggacgagtgccagtttaacccctgcttccctggagtgaagtgcgtgaac
actgccccgggctttcgctgtgacgcctgtccgctgggctacactggccagccagtggag
ggcgtgggagttttgttcgctcagaccaacaaacaggtctgtgacgacattgacgaatgc
aaaggacccgacaacggaggctgcaccgcaaactcagtctgtcacaactctgtgggctcc
tatcattgcggcagctgtaagtcaggtttcacaggagaccaggtgaaaggctgtaagccg
gagatcagctgcagcaacagcctgaccaacccctgtgatatcaacgcccagtgttatgga
gaaagagatgggtcagtcacttgtcagtgtggaattggctgggcgggtaacggctacctg
tgcgggaaggataccgacattgatggatacccagatgagaaactcaaatgcaaggatttg
agctgcagaaaggataactgtgtctacgttcctaactctggtcaagaggacgccgacagg
gacggccatggagacgcctgtgatgatgatgcagatggtgatggtattccaaatgagcag
gacaactgctggttgaagcccaacgtggaccagaggaacagtgacaaggacagccacggc
gatgcctgtgacaactgtcgcatggtggagaaccctgaccagagggacactgacagcgac
ggcaaaggggacgcctgtgatgacgacatggatggagatggcctgaagaacttcctggac
aactgccagcgtgtcaagaacagagaccaactggaccgggacggagacggcgtgggagat
gcttgcgacagctgccccgacatccctaacccgaaccagtctgatgttgataatgacctg
gttggagactcctgtgacacaaaccaagacagtgatggcgacggtcaccaggataccaag
gataattgcccattcgtgatcaatagctcccagctggacaccgacaaagacgggctgggt
gacgagtgtgacgatgacgatgacaacgatgggatcccggacattatgacacccggacca
gacaactgtcggctggtaccaaaccccgaccagactgacgacaatggtgatggagttgga
gatgtgtgtgagtctgactttgaccaggacaaagtgatcgacaggatcgacaactgtcct
gagaatgccgaggttaccttgactgacttcagggcctatcagacagtggtgctggaccct
gagggagacgcccagatcgaccccaactgggttgttttaaaccagggaatggaaattgtt
cagaccatgaatagtgatccaggacttgctgttggttacaccgctttcagtggagtggac
tttgaggggacatttcatgtgaacacagtgactgatgatgactacgccggtttcatattt
ggctaccaggactcatcctccttctatgtggtgatgtggaagcagactgaacagacctac
tggcaggcgacacccttcagagctgtggccgagcccggcatccagcttaaggctgtgaag
tctagatcaggccccggggagcacttgagaaactcgctgtggcacacgggagacaccaac
gaccaggtgcgtctgctgtggaaggacccaagaaatgtaggctggaaggacaaggtgtcc
taccgttggtacctgcagcaccgcccacaggttggatacattagagcacggttttatgag
ggaactgagctggttgcagactctggtgtgactattgacacgaccatgagaggagggcga
ctcggtgtgttctgtttctcgcaagaaaacatcatctggtccaatttgaaataccgctgc
aatgacaccatccctgaggatttccaggagttcagcactcagcacggcactgactcactc
taa
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