Xiphias gladius (swordfish): 120806988
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Entry
120806988 CDS
T07311
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
xgl
Xiphias gladius (swordfish)
Pathway
xgl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120806988 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xgl03019
]
120806988 (xab2)
03041 Spliceosome [BR:
xgl03041
]
120806988 (xab2)
Messenger RNA biogenesis [BR:
xgl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
120806988 (xab2)
Spliceosome [BR:
xgl03041
]
Complex B
Other components
Prp19-related factors
120806988 (xab2)
Complex C
120806988 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_12
TPR_8
TPR_15
ARM_TT21_C
TPR_16
ARM_TT21
NRDE-2
SNAP
TPR_1
Big_2
DUF4515
Motif
Other DBs
NCBI-GeneID:
120806988
NCBI-ProteinID:
XP_040014518
LinkDB
All DBs
Position
LG3:16906964..16915641
Genome browser
AA seq
849 aa
AA seq
DB search
MPSLNGKTDVVFEDDDLPYEEEIIRNPYSVKCWMRYIEFKQNGPKSTLNMIYERALKELP
GSYKLWYSYLRERRKQVKGKCITEPAYEEVNNCHERALVFMHKMPRIWLDYCQFLVSQCK
ITRSRRTFDRALRALPVTQHPRIWPLYLRFVRNLPLPETAIRVYRRYLKLSPENTEEYID
YLRSVGRLDEAALRLAAVVNDESFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTAEMGQDEDDDIDLELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGNPRQIINTYTEAVQTVDPMKATGKPHSLWVSFAKFYEENEQLDDARTIFEKATKVN
YKQVDDLAAVWCEYGEMELRHENYEQALRILRKATAIPSKKAEYFDASEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGI
ALFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEE
YGLARHAMAVYERATQAVEAEERHHMFNIYIKRAAEIYGVTYTRAIYQKAIEVLPDEHAR
DMCQRFADMESKLGEIDRARAIYSYCSQICDPRVTANFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMLKATTSATGTVSDLAPGQMGIDDMKMLEQKAQQLAAEAEQ
DKPKPKEKILFVRSDTSRSELAELSKQANPDEIDIDDDDEDEDEDQGPDEVQLEQKSIPS
AVFGGLKDD
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atgccttcgttaaacggaaaaactgatgttgtgtttgaggacgatgatttgccttatgaa
gaagagattatcaggaacccatactcggtcaagtgctggatgcgttatatcgagttcaaa
cagaacggacccaaatccaccctgaacatgatctatgagcgggctctgaaagagctgcct
ggcagttataagctgtggtatagttatctgagagagagacggaagcaagtcaaagggaaa
tgtatcactgaaccagcctacgaagaggtcaataattgccatgaaagggcactggtgttt
atgcataagatgcctagaatatggcttgattactgccagttccttgtgtctcaatgcaag
atcacaagaagtcggcgaacatttgaccgtgcactcagagctcttcctgttactcagcac
ccacgcatctggcctctgtatctccgctttgtccgtaacctacccctgcctgagaccgcc
atccgggtgtatcgcaggtaccttaagctttctccagagaatacagaggaatacatagac
tacttacggtctgtcggccgcttggatgaagcagctttgcgactagcagctgttgtcaat
gacgaaagctttgtgtccaaagagggcaagtctaactatcaactttggcatgagctatgc
gacctgatctcccagaaccctgataaagtgacctctctgaatgtaggggccatcatccga
ggaggcctcactcgcttcacagaccaacttggaaaactgtggtgctccttagctgactat
tacatcaggagtggccactttgagaaagcccgtgatgtgtatgaggaggccatccttaca
gtggtaacagtgagggatttcacacaagtgtttgatagttatgcccagtttgaggagagc
atgattgctgccaagatggagaccactgctgagatggggcaggatgaagatgatgatata
gacctggagcttagacttgcccgctttgagcaattgatagcccggcggcccctcctcttg
aacagtgtactactgaggcagaacccccataatgtccatgagtggcacaagagggtaaaa
ttgtatgaaggcaatccacggcagattatcaacacatatactgaggcagttcagactgtg
gatccaatgaaggcaacagggaagcctcactctctctgggtttcctttgctaaattctat
gaagaaaacgagcagctggatgatgccaggacaatctttgagaaggctaccaaggtgaac
tacaagcaggtggacgacctcgctgcagtgtggtgtgaatatggagagatggagcttcgc
cacgagaactatgaacaggcactgcgcatactgaggaaagctacagccatcccatccaag
aaagcagagtactttgatgcatctgagccagtccaaaacagagtgtacaagtccttgaag
gtctggtctatgttggcagacttggaggagagtcttggcaccttccagtctactaaagca
gtatatgaccgcattattgatctccgcatagccacaccacagatcatcatcaattatgcc
atgttccttgaagagcacaactactttgaggaaagcttcaaagcatatgagcgtggtatc
gctctcttcaggtggccaaatgtttatgacatctggaacacttacctcaccaagttcatt
gatcgttatgggggcaaaaagctggaaagagctagagatttatttgaacaagccctggat
ggctgccccgccaagtttgccaagaccatttacctgttgtatgccaaattggaggaggag
tatggattggcacgacacgccatggctgtctatgaaagagcaacacaggcagtagaagct
gaggagagacatcacatgttcaatatctacatcaagagagcagctgaaatttatggagtg
acctataccagagcaatttaccagaaagctattgaggtccttcctgatgagcatgcaagg
gacatgtgtcagcgatttgctgacatggagagtaaattgggtgagattgatcgggccaga
gcaatctactcctactgctcccagatctgtgacccaagggtgacagctaatttctggcag
acctggaaagaatttgagatccgccatggaaatgaagacaccattagagaaatgctgagg
atcaaacgcagtgtccaagccacatacaacacccaggtcaactttatgtcctcacagatg
ctgaaggctacaacaagcgccacaggcactgtgtcagatcttgctccaggccagatggga
attgatgacatgaagatgttggagcagaaagcacagcagcttgctgctgaagccgagcag
gacaaacccaagcccaaagagaagattctctttgtcaggagtgacacttctcgcagtgaa
ctggctgagctttccaaacaagctaatccagatgagatcgacattgatgatgacgacgag
gatgaagatgaagaccaaggaccagatgaagtgcagcttgaacagaagagtatcccttcg
gctgtctttggagggcttaaagatgactga
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