Xiphias gladius (swordfish): 120807231
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Entry
120807231 CDS
T07311
Name
(RefSeq) transcription factor SOX-13-like isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
xgl
Xiphias gladius (swordfish)
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xgl03000
]
120807231
Transcription factors [BR:
xgl03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
120807231
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
AAA_23
Motif
Other DBs
NCBI-GeneID:
120807231
NCBI-ProteinID:
XP_040014929
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All DBs
Position
LG21:28341295..28392596
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AA seq
665 aa
AA seq
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MSHFQRHLETTAAAHTQPYKHLHTHSRMVEPNPPALHVLSSGDVSMAGVGVKVEQEESNE
GGGVITNAEPPKTSPSRDWSGNQPLEARQLTPPLSRSPSDSSPGKELAHRQSPVGLKEVR
TRDRPEGQSNFKEVMPTIEKLLNADWKEKLLDKSTVGAGQLKGTPESLAEKELQLLMMIN
QLSGLREQLLGAHSEQRNMAALLLEKQQQQMELARQQQEQIAKQQQQLIQQQHKINLLQQ
QIQQVNMPYVMIPAFHPNTQPLPVTSDPQMTLPLQPIPCKPAVDYPMQLLPNPHSTPVKR
SSGSFRQEASQPLNLTSKPKGLELGKTPSPQSLELGSLALQGAYRPRDLQREVSHSPPRS
ALSFLGDGDVVTQAIHDAQQLLRSHSSAGRERERDRDRERNGGGKMEYKDSPHSERISHS
EQVEDRHRLPSTEDHLSSDSEGALPVSVPGSYAEARPPPSSGHIKRPMNAFMVWAKDERR
RILQAFPDMHNSSISKILGSRWKAMSNQEKQPYYEEQARLSRQHLERYPDYKYKPRPKRT
CIVEGRRLRVGEYKAMMKSRRQEQRATYTHSQTEPQQLHYSHSDGQYPSGAGSVSMATMP
FHPALLEHYLPQVPPGPCRGEGHATPTSLPRERERERERERPPYSEGDESDGGERSEGEL
VLLTD
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgagccactttcagagacacctagagacaacagcggccgcacacacacaaccctataag
catctacacacacattcaagaatggttgagcctaaccctccagcgctgcatgtcctctcc
agcggggatgtcagcatggcaggtgttggtgtcaaagtagaacaggaggagtccaatgaa
ggaggcggagtcattaccaatgctgaacctcctaagacatctccctcacgtgattggtca
ggaaatcagccactggaagctcgccaactgaccccaccactgtcccgctccccttcggac
agctctccaggtaaggagctggctcacaggcaaagccccgtgggactgaaggaggtcaga
acacgtgatcgaccagaagggcaatccaacttcaaggaagtaatgcccaccattgagaag
ctgctgaatgctgactggaaggagaaacttctggataaaagcacagtgggggcaggacaa
ctgaaaggtacccctgagtctctggcagagaaggagctccagttattgatgatgatcaac
cagctgagcggtctaagggagcagctactgggagcccactctgagcagaggaacatggcc
gccctgctgctggagaaacagcagcagcagatggaactggctcgacaacagcaggagcag
attgccaagcagcagcagcagctaatccagcagcagcacaagatcaacctgcttcagcag
cagatccagcaggtgaacatgccctacgtgatgatcccggctttccaccccaacacccag
cccctcccagtcacgtctgacccacagatgaccctgccactgcaaccaatcccctgcaag
ccagccgtggactatcctatgcagctgctaccgaaccctcactccacccctgtgaagagg
agcagtggttccttccgacaggaagccagtcagcccttgaacctgacctccaagccaaag
gggctggagctgggaaaaacacccagtccacaaagcctggagctaggatcgctggcactg
cagggggcctacagacccagagatctccagagagaagtgtcccacagtccaccacgatct
gccctcagtttcctcggagatggcgatgttgtcacccaggctatccatgatgcccagcag
ctcctgaggagccacagcagcgcagggcgagagagggagagagacagggaccgagagaga
aacggcggtggaaagatggagtataaagattctccccacagcgagagaatttcccactcc
gagcaggttgaagacagacatcgcctgccgtccactgaggaccacctgagcagtgactct
gagggtgctctgcccgtctcggtcccgggcagctacgctgaggcccggccccctccctcc
tcaggccacatcaagagacccatgaatgccttcatggtgtgggccaaggacgagcgcagg
aggatcctgcaggcctttcctgacatgcacaactcctccatcagcaagatcctgggttcc
aggtggaaggcaatgtccaaccaagagaagcagccttactatgaagagcaggcgaggctg
agccggcagcacttggagcgctaccccgactacaagtacaaaccccggcccaaacggacc
tgcatcgtggaggggcggaggctgagggtgggcgagtacaaggccatgatgaagagccgc
cggcaggaacagagagcgacctacacacacagtcaaacggagcctcagcagctccactac
tcgcacagcgatggccagtacccaagcggcgctggctctgtctccatggcaactatgccc
tttcaccccgcgctactggagcattacctgccgcaggtcccgcccggcccatgtcgcggg
gagggccatgccacgcccacttccctgcccagagagagggagagggaacgagagagggag
cggcccccgtacagcgaaggagacgaaagtgatgggggagaaaggagtgagggggaactg
gtgctcctgacagactga
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