Xiphias gladius (swordfish): 120807273
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Entry
120807273 CDS
T07311
Symbol
col2a1b
Name
(RefSeq) collagen, type II, alpha 1b
KO
K19719
collagen type II alpha
Organism
xgl
Xiphias gladius (swordfish)
Pathway
xgl04510
Focal adhesion
xgl04512
ECM-receptor interaction
xgl04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120807273 (col2a1b)
04518 Integrin signaling
120807273 (col2a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120807273 (col2a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
xgl00536
]
120807273 (col2a1b)
Glycosaminoglycan binding proteins [BR:
xgl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120807273 (col2a1b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
120807273
NCBI-ProteinID:
XP_040014992
LinkDB
All DBs
Position
LG21
Genome browser
AA seq
1491 aa
AA seq
DB search
MFSYMDSRTVLLLVATQVCLLAVVRCQEEDDQEDAFSCIQDGQRYSDKDVWKPEPCRICV
CDTGTVLCDEIVCEELKDCPKPEIPFGECCPICAADTSPPIGVPGAKGQKGEPGDITDVV
GPKGPPGPMGPPGEQGPRGARGEKGEKGSSGPRGRDGEPGTPGNPGPPGPPGPNGPPGLG
GNFAAQMTGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPTGAPGPQGFQGNPGEAGEPGQS
GPMGPRGPPGPPGKPGDDGEAGKPGKSGERGPPGPQGARGFPGTPGLPGIKGHRGYPGLD
GAKGETGAVGAKGESGSPGENGAPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAGPP
GPVGPSGAPGFPGSPGAKGEAGPTGARGPEGAQGPRGESGTPGSPGPSGASGNPGTDGIP
GAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGIPGFKGEAGPKGEIGPA
GPQGAHGPQGEEGKRGPRGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPS
GASGPKGANGDPGRPGESGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGTR
GQPGVMGFPGPKGATGESGKSGEKGLAGAPGLRGLPGKDGETGSAGPPGPAGPAGERGEQ
GQPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAAGATGPRGERGFPGERGAAGPQGLQ
GPRGLPGTPGTDGPKGAIGPAGALGAQGPPGLQGMPGERGAAGIPGPKGDRGDIGEKGPE
GASGKDGGRGLTGPIGPPGPSGPNGEKGESGPAGPSGAPGTRGAPGDRGETGPPGPAGFA
GPPGADGQPGTKGEQGESGQKGDAGAPGPQGPSGAPGPAGPTGVSGPKGARGAQGPPGAT
GFPGAAGRVGPPGPNGNPGPAGPAGPPGKDGPKGVRGDGGPPGRQGDAGLRGAAGAPGEK
GDAGEDGPPGPPGPSGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGGAGDR
GPPGPVGPPGLTGPAGEPGREGNPGSDGPPGRDGATGIKGDRGNTGPAGAPGAPGAPGAS
GPVGPTGKQGDRGEAGAQGPAGPSGPAGARGMPGPQGPRGDKGEAGEAGERGQKGHRGFT
GLQGLPGPPGQSGDQGATGPAGPAGQRGPPGPVGPAGKDGANGMPGPIGPPGPRGRSGET
GPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGQTEKSPDPLRYMRADQASGNLRQHDAEVD
ATLKSLNNQIENIRSPEGSKKNPARTCRDLKLCHPDWKSGEYWIDPNQGCTIDAIKVFCN
METGESCVYSKPSSIPRKNWWSSKSKDRKHIWFGETMNGGFHFSYGDDTLAPNTAAIQMT
FLRLLSTEASQNLTYHCKNSVAYMDASTGNLKKAVLLQGSNDVEIRAEGNSRFTYSVMED
GCAKHTGQWGKTVIEYRSQKTSRLPIVDIAPMDIGGADQEFGVDVGAVCFL
NT seq
4476 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctatatggattccaggactgtactgctacttgtagcaacccaagtctgtcta
ttagccgttgtgagatgtcaggaggaggacgaccaggaggatgcttttagctgtatacaa
gacggacagcgctatagcgacaaggacgtatggaagccagagccttgtcgcatctgtgtg
tgtgacactggaaccgtcctgtgtgatgaaattgtctgcgaggagctaaaagactgcccc
aaacctgaaatcccattcggagagtgttgccccatctgcgcagctgacacatctccgcca
atcggagtacctggagcaaagggtcagaaaggcgaacccggagacattactgatgttgta
ggaccaaaaggaccacctggcccaatgggcccaccaggagagcaaggaccccgcggagca
agaggagagaagggagagaagggaagctctggtccccgtggcagagatggtgagcctggc
acccccggaaaccctggcccccctggacctccaggacctaatggaccccctggccttggg
ggaaactttgctgctcagatgactggtggctttgatgagaaggccggtggcgcacagatg
ggtgtgatgcaaggaccaatgggccctatgggaccaagaggaccacctggccccaccgga
gcacctggcccgcaaggtttccaaggcaacccaggagaggctggagagcccggacaatca
ggccccatgggtccccgcggcccccctggacctcctggaaaacctggagatgatggtgaa
gctggcaaaccaggcaaatcaggcgagcgtggacctcctggacctcagggagctcgtgga
ttcccaggaactcctggcctgcctggcatcaagggacacagaggttatccaggtctcgat
ggtgcaaagggagagactggagctgttggtgctaagggtgagtctggttctcccggagag
aacggcgctcctggaccaatgggacctcgtggtttgcccggtgagagaggccgtcctgga
cccagtggagctgctggagcacgtggaaatgatggcttgcctggccctgctggtccccca
ggccctgttggtccttctggagctcctggcttccctggctctcctggtgcaaagggagaa
gctggtcctactggtgctcgtggacccgagggtgcacagggacctcgtggagagtctggc
acacctggatcaccaggaccttctggcgcttctggcaaccccggtactgatggtatccct
ggagctaaaggatcagctggtgctcctggtatcgctggtgctccaggtttcccaggacct
cgtgggcctcccgggcctcagggagcaactggacctctcgggcccaaaggaacatctgga
gacccaggtattccagggttcaagggagaggctggacccaaaggagaaattggaccagct
ggtcctcagggagcacatggcccacaaggagaagagggcaagagaggacccaggggtgag
cccggtgctgctggaccacttggacctcctggagagagaggagcccccggtaaccgtggt
ttccctggtcaagatggtctggctggtcccaagggagcccccggtgagcgtggaccctct
ggtgccagtggtcccaagggtgctaatggtgaccctggccgtcctggagagtctggtctg
cctggtgccaggggcctaactggacgccctggtgacgctggtcctcaaggcaaagttgga
ccttctggagctcctggtgaggatggacgtccaggaccccctggcccacagggaacccgt
ggacagcctggtgtcatgggattccccggacccaaaggagcgactggtgagtcaggcaag
tctggtgagaaaggactggctggagctcctggtctgagaggtctgcctggcaaagatgga
gaaaccggcagtgctggaccccctggccctgctggtcctgctggagagagaggagagcaa
ggacagccaggtccctccggcttccagggtctgcctggacctcctggcccccctggtgag
ggaggcaagcctggagaccagggtgttcctggagaggctggagctgctggtgctactgga
cccagaggagagcgtggtttccccggggagagaggagctgctggtcctcagggtctgcag
ggacccagaggtctgcctggaactcctggaactgacggacccaagggagccattggacct
gccggggccctcggagctcagggaccccctggcctgcagggtatgcctggagagagagga
gctgctggcattcctggacctaaaggagacagaggtgacattggagagaaaggacccgaa
ggtgcttccggcaaagacggtggcagaggtctcactggtcccattggtcctcctggtcct
tctggtcccaacggtgagaagggtgaatctggtcctgcaggtccttccggagctcctgga
acccgtggtgctcctggtgacaggggtgagactggacctcctggacctgctggatttgct
ggaccccctggggctgacggtcaacctggaaccaaaggagagcagggagaatctggacag
aagggagatgctggtgcccctggaccccaaggaccatctggtgcccctggacctgcaggt
cctacaggtgtttctggacctaaaggtgctcgtggtgctcagggacctcctggtgccact
ggtttccctggagctgctggccgagttggtccccctggtcccaacggtaatcctggacct
gctggacctgccggcccacctggcaaagatggacccaagggcgtgaggggagatggtgga
cctccaggcagacaaggtgacgctgggctccgcggtgctgctggggctcctggagagaag
ggagatgctggagaggacggtcctcctggtcccccaggtccttcaggtcctcagggtttg
gctggtcagcgtggtattgtcggtctccctggacagcgtggtgagagaggtttccctggt
ctgcctggaccttcgggtgagcctggaaagcagggagctcctggtggcgccggagaccgt
ggaccccccggacctgttggaccacctggactcaccggacctgcaggagagcctggcagg
gagggcaaccctggatctgatggacctcctggtagagatggtgctactggaatcaagggt
gatcgcggtaacaccggtcccgctggtgctcctggtgctccaggcgctcctggtgcttca
ggccctgttggtcctaccggtaaacagggagacagaggagaggctggtgcccaaggacct
gccggaccttcaggacctgctggagccagaggaatgcccggaccccaaggaccccgtggt
gacaaaggtgaggctggggaggccggtgagagaggacagaagggacacagaggcttcact
ggtctgcagggtctgcccggacctccgggtcaatcaggagaccagggtgctactggacct
gctggacctgctggacaaagaggaccacctggacctgttggccctgccggaaaggatggt
gcaaacggtatgccaggccccattggaccccccggacctcgtggtcgcagtggagagacc
ggtcccgctggtccccccggaaaccctggaccccctggtcctccgggtccccctggccct
ggcattgacatgtctgccttcgctggcctgggtcagactgagaagtcccctgatcctctc
aggtacatgagggccgaccaggcttctggaaacctccgtcagcatgatgctgaggtcgac
gccaccctcaagtctctcaacaaccagattgagaacatccgcagccccgagggatccaag
aagaaccctgctcgcacctgcagagacctgaagctctgccatcctgactggaagagcgga
gagtactggattgatcccaatcagggctgcactattgatgcaatcaaggtcttctgcaac
atggagacaggagagtcctgcgtctactccaagccttccagcatccctcgcaagaactgg
tggtccagcaagagcaaagaccgcaaacacatctggttcggcgagacaatgaatggagga
ttccacttcagctacggtgatgacaccctggcgcccaacactgccgccattcagatgacc
ttcctgagacttctgtccaccgaggcctctcaaaacctcacctaccactgtaagaacagc
gtggcctacatggacgcctcaacggggaacctgaagaaggccgtgctgctgcagggctcc
aatgacgtggagatcagagctgagggcaacagccgcttcacctacagcgtgatggaggac
ggctgcgcgaaacacacgggacagtggggcaagacagtgatcgaatacagatcgcagaag
acctctcgtctgcccattgtggacattgcccccatggatattggtggagcagaccaggag
ttcggagtcgatgttggggcagtctgcttcttgtaa
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integrated database retrieval system
