Xanthomonas graminis: KFS84_01940
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Entry
KFS84_01940 CDS
T10672
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
xgm Xanthomonas graminis
Pathway
xgm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xgm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KFS84_01940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xgm03019
]
KFS84_01940
Enzymes [BR:
xgm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KFS84_01940
Messenger RNA biogenesis [BR:
xgm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KFS84_01940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
UKE54728
LinkDB
All DBs
Position
complement(433122..434483)
Genome browser
AA seq
453 aa
AA seq
DB search
MSFESLGLAPFLLRALAEQGYETPTPIQLQAIPLALAGHDLMAGAQTGTGKTAAFGLPLL
QHLGTSPQPVGNGARRPRALILTPTRELATQVHDSLRGYSKYLRIPSTTIYGGVGMGNQL
DALRRGVDLLIACPGRLLDHLERRSVDLSGIEILVLDEADRMLDMGFLPSIKRILAKLPK
QNRQTLLFSATFEESIKQLAREFMHNPQEIQATPSNTVADTITHRVHPVDGTRKRELLLH
LLAADSRMQTLVFARTKHGADKLTMFLDKSGLKTAAIHGNKSQGQRLRALSDFKAGRITV
LVATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGAQGEAVSLVAQDEAKLLR
AISRMLKREMDIRDVPGFEPSTPIRWGNNNPADERPGGQRPPRKSTHVRRPHGDAPRAHA
HAGAKPAGGTQPGGARRQGERRRSGGGQPSAAR
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttcgaatccctgggcctggcgcccttcctgctgcgtgcgttggccgagcagggc
tatgaaacccccaccccgatccagttgcaggcgattccgctggcgctggccggccacgac
ctgatggccggcgcgcagaccggcaccggcaagaccgccgcgttcggcctgccgctgctg
cagcacctgggcacctcgccgcagccggtcggcaacggcgcacgcaggccgcgcgcgctg
atcctgaccccgacccgcgagctggccacccaggtgcacgacagcctgcgcggctacagc
aagtacctgcgcatccccagcaccaccatctacggcggcgtcggcatgggcaaccagctc
gacgcgctgcgccgcggcgtggacctgctgatcgcctgcccgggccgcctgctcgatcac
ctcgagcgccgcagcgtggacctgtcgggcatcgagatcctggtgctggacgaagccgac
cgcatgctcgacatgggcttcctgccctcgatcaagcgcatcctggccaagctgcccaag
cagaaccggcagaccctgctgttctctgccaccttcgaggaaagtatcaagcagctggcc
cgcgagttcatgcacaacccgcaggaaatccaggccacgccgagcaacaccgtcgccgac
accatcacccaccgcgtgcacccggtcgatggcacgcgcaagcgcgaactgctgctgcac
ctgctggccgccgactcgcgcatgcagaccctggtgttcgcgcgcaccaagcacggcgcc
gacaagctgactatgttcctggacaagtccgggctgaagaccgccgcgatccacggcaac
aagagccagggccagcgcctgcgcgcgctgagcgacttcaaggccggccgcatcacggtg
ctggtggcgaccgacatcgccgcgcgcggcatcgacatcgaccagctgccgaaggtcatc
aactacgacctgccgatggtcgccgaagactacgtgcaccggatcggccgcaccggccgc
aacggcgcgcagggcgaggcggtgtcgctggtggcgcaggacgaggccaagctgctgcgc
gcgatctcgcgcatgctcaagcgtgagatggacatccgcgacgtgccgggcttcgagccg
tccacgccgatccgctggggcaacaacaatccggccgacgagcgtccgggcggccagcgt
ccgccgcgcaagagcacccatgtgcggcgtccgcacggcgacgcgccgcgcgcgcacgcg
catgccggcgccaagccggccggcggcacccagccgggcggcgcacgccgccagggcgag
cgccgtcgcagcggcggcggccagcccagcgccgcgcgctaa
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