Xanthomonas graminis: KFS84_03680
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Entry
KFS84_03680 CDS
T10672
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
xgm Xanthomonas graminis
Pathway
xgm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xgm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KFS84_03680 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xgm03019
]
KFS84_03680 (rhlB)
Enzymes [BR:
xgm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KFS84_03680 (rhlB)
Messenger RNA biogenesis [BR:
xgm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KFS84_03680 (rhlB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
RhlB
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UKE54987
LinkDB
All DBs
Position
834304..836112
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AA seq
602 aa
AA seq
DB search
MSDKPLTDVTFSAFELQPALLAGLEGAGFTRCTPIQALTLPVALPGRDVAGQAQTGTGKT
LAFLVTVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYG
GVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDI
RFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETESITAARVRQRIYFPS
DEEKLTLLLGLLSRSEGARTMVFVNTKAFVERVARSLERNGYRVGVLSGDVPQKKRETLL
NRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISF
ACERYAMSLPDIEAYIEQKIPVEPVTAELLMALPRTPRAVVEGEAVEVDADADESIGDIF
REARAQREADEQRRGGGGSRGKPGAGRSGPGGPGGGAGGRREARAADGKPRRPRTPRPAD
AEAGAATAAVADAPAAVATEAAPAVAAPTPKHKPARTDAEGAPAVDGERAPRKRRRRRGG
RPLEGAEGAEGAAAVASSDAPTKPVQVKAARQGERAAAPAAAANDSFLTRLGRKLRSLVS
SS
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacaaacccctgaccgatgtgactttttccgcgttcgagctgcaaccggcgctg
ctggccggcctcgaaggcgccggcttcacccgctgcacgccgatccaggcgctgaccctg
ccggtggccctgccgggccgcgacgtggccggccaggcccagaccggtaccggcaagacc
ctggcgttcctggtgacggtgatgaaccgcctgctcagccgcccggcgctggccgaccgc
aagcccgaggatccgcgcgcgctgatcctggccccgacccgcgaactggcgatccagatc
cacaaggacgcggtcaagttcggtgccgacctgggcctgcgcttcgccctggtctacggc
ggcgtggactacgacaagcagcgcgaactgctgcagcagggcgtggacgtgatcatcgcc
accccgggccggctgatcgactacgtcaagcaacacaaagtggtgtcgctgcacgcctgc
gagatctgcgtgctcgacgaagccgaccgcatgttcgacctgggcttcatcaaggacatc
cgcttcctgctgcggcgcatgcccgagcgcggcacccggcagaccctgctgttctcggcc
acgctcagccaccgcgtgctggagctggcctacgagcacatgaacgagccggaaaagctc
gtggtcgagaccgagagcatcaccgccgcgcgcgtgcgccagcgcatctacttcccctcc
gacgaggagaagctgaccctgctgctgggcctgctgtcgcgcagcgagggcgcgcgcacc
atggtgttcgtcaacaccaaggccttcgtcgagcgcgtggcgcgttcgctggagcgcaat
ggctaccgggtcggcgtgctgtccggcgacgtgccgcagaagaagcgcgagaccctgctc
aaccgcttccagaagggccagctggagatcctggtcgccaccgacgtggccgcgcgcggc
ctgcacatcgacggcgtcaagtacgtctacaactacgacctgccgttcgacgccgaggac
tacgtgcaccgcatcggccgcaccgcgcggctgggcgaggagggcgatgcgatcagcttc
gcctgcgagcgctacgcgatgagcctgccggacatcgaggcctacatcgagcagaaaatc
ccggtcgagccggtcaccgccgaactgctgatggcgctgccgcgcactccgcgcgcggtg
gtcgagggcgaagcggtcgaggtcgatgcggatgccgacgagagcatcggggacatcttc
cgcgaggcgcgtgcgcagcgcgaggccgacgaacagcgtcgcggcggcggcggcagccgc
ggcaagcccggcgctggccgtagcggcccgggcggcccgggcggcggtgccggcggccgc
cgcgaagcgcgcgctgccgacggcaagccgcggcgcccgcgcaccccgcgtccggccgac
gccgaggccggggcagcgactgcagctgtcgccgacgcgcccgcggcggtcgccaccgaa
gccgcgccagcggtcgcggcgcccacgcccaagcacaagccggcccgcacggacgccgaa
ggcgcgcctgcggtggatggcgagcgcgcgccgcgcaagcgccggcgtcgccgcggcggg
cgcccgctcgaaggcgccgagggggccgagggcgctgctgccgtcgcgagcagtgacgcg
ccgaccaagccggtgcaggtcaaggccgcgcgccagggcgagcgtgccgccgcgccggcc
gccgcagcgaacgattcgttcctgacccgcctcggccgcaagctgcgttcgctggtttcc
agctcctga
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