Xanthomonas graminis: KFS84_08110
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Entry
KFS84_08110 CDS
T10672
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
xgm Xanthomonas graminis
Pathway
xgm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xgm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KFS84_08110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xgm03019
]
KFS84_08110
03009 Ribosome biogenesis [BR:
xgm03009
]
KFS84_08110
Enzymes [BR:
xgm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KFS84_08110
Messenger RNA biogenesis [BR:
xgm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KFS84_08110
Ribosome biogenesis [BR:
xgm03009
]
Prokaryotic type
rRNA helicases
KFS84_08110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
adh_short
Cas3-like_C_2
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
UKE55658
LinkDB
All DBs
Position
1850709..1852718
Genome browser
AA seq
669 aa
AA seq
DB search
MSQDTPAPLLFADLGLSPAVMKAVADVGYESPSPIQAATIPALLTGRDLLGQAQTGTGKT
AAFALPILSRLDFNQRKPQALVLAPTRELAIQVAEAFHRYAGAIPGFQVLPVYGGQPYVQ
QLSALKRGVHVVVGTPGRVIDHLERGTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKL
PASRQVALFSATMPTAIKRIAQTYLNDPAEVIIASKTTTSANVRQRYWAVSGLHKLDALT
RILEVEPFDVMIVFARTKAATDELAQKLQARGLAAAAINGDIQQSQRERVIQQLKDGKLD
ILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFVSPREKGML
RAIERATRQPIEEMQLPSVDAVNDQRVTRFMEKISETIASGGIDTYRDLLQRFETEKNVP
MVEVAAALARLLQGDTPLLLAPERARAPQGERFERPTAERRERADRGERSERPKFEPKFD
REARPPRRDEGERAPPRAPRPAPAGHGPDYDYQRDVGSFEAPRRDKAPKAPRGEPEVGME
TYRIEVGHQHGVKPANIVGAIANEAGLESKYIGRIDIHDDHSVLDLPADMPNELLTHLKK
VWVSGQQLQMRKLDDAAAGASAPFKPKFARAAGKPGGRPNAAGPRPAGAATRMADKAGDR
PPRKGPPKR
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgtcccaagatacccccgcgccgctgctgttcgcagatctcggcctctcgcctgctgtg
atgaaggccgtcgccgatgtcggctacgagtcgccgtcgccgatccaggccgccaccatt
cccgcgctgctgaccggccgcgacctgctcggccaggcccagaccggcaccggcaagacc
gccgcgttcgcgctgccgatcctgtcgcggctggacttcaaccagcgcaagccgcaggcg
ctggtgctggcgccgacccgcgagctggcgatccaggtcgccgaggcgttccatcgctac
gccggcgcgatccccggcttccaggtgctgccggtgtacggcggccagccctacgtgcag
cagctgtcggcgctcaagcgcggcgtgcacgtggtggtgggcaccccggggcgggtcatc
gaccacctggagcgcggcaccctggacctgtcggagctgaagacgctggtgctcgacgag
gccgacgagatgctgcgcatgggcttcatcgacgacgtcgaggcggtgctgaagaagctg
ccggcctcgcgccaggtggcgctgttctcggcgaccatgccgaccgcgatcaagcgcatc
gcgcagacctatctgaacgatccggccgaagtcatcatcgcctccaagaccaccacgtcg
gcgaatgtccgccagcgttactgggcggtcagcggcctgcacaagctcgatgcgctgacc
cgcatcctggaagtggagccgttcgacgtgatgatcgtgttcgcgcgcaccaaggccgcc
accgacgagctggcgcagaagctgcaggcgcgcggcctggccgccgcggcgatcaacggc
gacatccagcagtcgcagcgcgagcgggtgatccagcagctcaaggacggcaagctcgac
atcctggtcgccaccgacgtggccgcacgcggcctggacgtggagcggatcagccatgtg
ctgaactacgacatcccgtacgacaccgaaagctatgtgcaccgcatcggccgcaccggc
cgcgccggccgcagcggcgaggcgatcctgttcgtcagcccgcgcgagaagggcatgctg
cgcgcgatcgagcgcgccacccggcagccgatcgaagaaatgcagctgccgagcgtggat
gcggtcaacgaccagcgcgtgacccgtttcatggagaagatcagcgagaccatcgccagc
ggcggcatcgacacctaccgcgatctgctgcagcgcttcgagaccgagaagaacgtgccg
atggtcgaggtggccgcggcgctggcgcgcctgttgcagggcgacacgccgctgctgctg
gcgccggagcgcgcgcgcgcgccacagggcgagcgcttcgagcggccaactgccgagcgc
cgcgagcgcgccgaccgcggcgagcgcagcgaacgtcccaagttcgagcccaagttcgac
cgcgaagcgcgcccgccgcgccgcgacgaaggcgagcgtgcgccgccgcgtgcgccgcgt
cccgcgccggccggacacggccccgactatgactaccagcgcgacgtcggcagtttcgag
gccccgcgccgcgacaaggcgcccaaggcgccacgcggcgagccggaagtgggcatggag
acctaccgcatcgaggtcggccaccagcatggggtcaagccggccaacatcgtcggcgcg
atcgccaacgaggctggcctggagagcaagtacatcggccgcatcgacatccacgacgac
cattcggtgctggacctgccggcggacatgccgaacgagctgctgacccacctgaagaag
gtctgggtgtccggccagcaactgcagatgcgcaagctcgacgacgccgcggccggcgcc
agcgcgccgttcaagccgaagttcgcgcgtgccgccggcaagcccggcggccgcccgaac
gcggccggtccgcgcccggccggcgctgccacgcgcatggccgacaaggccggcgatcgc
ccgccgcgcaaggggccgcccaagcgctga
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