Xenorhabdus griffiniae: QL128_01705
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Entry
QL128_01705 CDS
T09400
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
xgr
Xenorhabdus griffiniae
Pathway
xgr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
xgr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
QL128_01705 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xgr03021
]
QL128_01705 (rpoC)
03400 DNA repair and recombination proteins [BR:
xgr03400
]
QL128_01705 (rpoC)
Enzymes [BR:
xgr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
QL128_01705 (rpoC)
Transcription machinery [BR:
xgr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
QL128_01705 (rpoC)
DNA repair and recombination proteins [BR:
xgr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
QL128_01705 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
EAD9
Motif
Other DBs
NCBI-ProteinID:
WMV72809
LinkDB
All DBs
Position
371218..375444
Genome browser
AA seq
1408 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVVEGGMTSLERGQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKSIDLENECETLREELNETNSETKRKKLTKRIKLLEAFIQSGNKPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPASGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERVYRAG
LASLHARVKVRITEEVKDGEGNVTVNTGLVDTTIGRAILWMIVPRGLPYSLINQPLGKKA
ISKMLNTCYRILGLKPTVILADQTMYTGFAYAARSGVSVGIDDMVIPEKKEGIIAEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSSETVINRNGEEEQQVSFN
NIFMMADSGARGSAAQIRQLAGMRGLMATPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHDGILMTPVIEGGDVKEPLRERVL
GRVAAEDILKPGTADILVPRNTLLNEKWCDLLEENSVDSVKVRSVVSCETDFGVCANCYG
RDLARGHLINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVRNKGHLKL
INAKFVTNSASKLVITSRNTELRLIDDFGRTKESYKVPYGSVLTKGDGETVAGGETVANW
DPHTMPIVSEVSGIIQFYDMVDGQTITRQTDELTGLSSLVVLDSAERTGSGKDLRPALKI
VDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGMSISAGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPLDGGEPYEEMIPKWRQLNVFE
GEVVERGDVISDGPESPHDILRLRGVHAVARYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKATIANAGSSEFLEGEQVEYARVKVSNRKLEQDGKVPALFQRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRIRRRQENEVVE
APQFSVDEATANLAELLNAGFGSSSDNE
NT seq
4227 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattgaagtttctgaaagcgcaaaccaagaccgaagagtttgatgcgatc
aaaattgctctggcctctccagatatgatccgttcgtggtcattcggggaagtaaaaaag
ccggaaactattaactaccgtacgttcaagcctgagcgtgacggtcttttctgtgcgcgt
attttcgggccagtaaaagattacgaatgcttgtgtggtaaatacaagcgtttgaaacac
cgtggtgtgatttgtgagaaatgtggcgttgaagtaacccagactaaagttcgtcgtgat
cgtatgggtcacattgaactggcatctccaaccgctcacatttggttcctgaaatctctg
ccatcccgcatcggcttattgctggatatgcctctgcgcgatattgaacgcgtactgtac
ttcgaatcctatgtggttgttgaagggggtatgaccagccttgagcgtggacaaatcctg
actgaagaacagtatctggatgcactggaagagttcggtgatgaatttgacgcaaaaatg
ggtgcagaagcaatccaggctttgctgaaaagcatcgatctggaaaacgaatgtgaaacc
ttgcgcgaagaactgaacgaaaccaactctgaaaccaagcgtaagaagctgaccaagcgt
attaaactgctggaagcgttcattcagtctggcaacaaaccagagtggatggttctgacc
gttctgccagttctgccaccggatttgcgtccactggttccactggatggcggccgtttc
gcaacttcagacctgaacgatctgtatcgtcgcgttattaaccgtaacaaccgtttgaag
cgcctgttggatctggcagcaccagatatcatcgtacgtaacgaaaaacgtatgttgcag
gaagcggttgatgcgctgctggacaacggccgtcgcggtcgggcaattaccggttccaat
aagcgccctctgaaatccctggcagacatgatcaagggtaaacaggggcgtttccgtcag
aacttgctgggtaaacgtgttgactactcaggtcgttctgttattaccgtaggtccatac
ctgcgcctgcatcagtgtggtctgcctaagaagatggcactggagctgtttaagccattt
atttacggcaaactggaactgcgtggcctggcgacgactattaaagccgccaagaaaatg
gttgagcgtgaagaagcggtggtatgggatatcctggatgaagtcatccgtgagcaccct
gttctgctgaaccgtgcacctaccctccaccgtttgggtattcaggcatttgaacccgtt
ctgatcgagggtaaagctattcagttgcacccactcgtgtgtgcggcatataacgccgac
ttcgacggtgaccagatggctgttcacgtaccgttgacactggaagctcagttggaagcg
cgtgcgttgatgatgtctaccaacaacatcctgtctccagcgagcggtgaacctatcatc
gttccatctcaggacgttgtattgggtttgtactacatgacccgtgactgtgttaacgcg
aaaggcgaaggcatggttctgactggtcctaaagaagcagaacgcgtataccgcgcaggt
ctggcttctctgcacgcccgtgtcaaagttcgtatcacagaagaagtgaaagacggtgaa
ggtaatgtcactgtcaatacgggattggttgatacgaccattggccgtgccatcctgtgg
atgattgtaccgcgtggcttgccatactcattgattaaccagccactgggtaaaaaagct
atctccaagatgctaaatacctgttaccgcatactgggtttgaagccaaccgttattttg
gctgaccagaccatgtataccggttttgcttacgctgctcgttcaggggtatccgtaggt
attgacgacatggttattcctgagaagaaagaaggcatcatcgctgaagctgaagcggaa
gtggccgaaattcaggaacagttccagtcaggtctggtaactgctggcgaacgttataac
aaagttatcgatatctgggctgcggcgaacgaacgtgttgctaaggcgatgatggaaaac
ctgtcttctgaaacagtgattaaccgtaacggtgaagaagaacaacaggtttccttcaac
aacatctttatgatggccgactccggtgcgcgtggttctgctgctcagatccgtcagttg
gcgggtatgcgtggtctgatggcaacgccagatggctccattatcgaaaccccaattacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctcaacccacggtgctcgt
aaaggtcttgctgataccgcattgaaaacggcgaactccggttacctgacccgtcgtctg
gttgacgttgcccaagacttggttgtaactgaagatgactgtggtactcacgacggtatc
ctgatgaccccagttatcgaaggtggtgatgttaaagaaccactgcgtgaacgtgtattg
ggacgtgtagcggcggaagacatcctgaagccaggcacagcggacattctggttccacgt
aacacgttgctgaacgaaaaatggtgtgatctgttagaagagaactctgttgacagcgtg
aaagtacgctccgtagtaagttgtgaaactgactttggtgtttgtgcgaactgttacggc
cgtgaccttgctcgtggtcacctgatcaacaaaggtgaagcgatcggtgttatcgcagca
cagtcaatcggtgaaccaggtacacagttgacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggcagcagaatccagcattcaggtacgtaacaaaggtcatttgaaactg
atcaacgcgaaattcgttacgaactcagcaagcaaactggttattacctctcgtaatacc
gaattgcgcctgatcgacgatttcggtcgtaccaaagagagctataaagttccttacggc
tcggtattgacgaaaggtgatggtgagacagtagctggcggtgaaaccgttgcaaactgg
gatccacacaccatgccaatcgtgagtgaagtatccggtattatccagttctacgacatg
gttgatggtcaaaccattacccgtcagacggatgaactgaccggcctgtcttcactggtg
gttctggatagtgcagagcgtactggtagtggtaaagacctgcgtccggcactgaaaatc
gtagacgctcagggtaacgacgttctgatcccaggtacagatatgcctgctcagtacttc
ctgccgggtaaagcgattgttcagctggaagatggtatgtccatctctgcgggtgataca
ttggcgcgtattcctcaggaatctggcggtactaaagatatcaccggtggtctgccacgc
gttgcggacttgttcgaagctcgtcgtccgaaagagcctgctatcctggcagaaatcagc
ggtattgtttccttcggtaaagaaaccaaaggcaagcgccgtctggtcattactccgctg
gatggtggtgaaccttacgaagagatgatccctaaatggcgtcagctcaacgtgttcgaa
ggtgaggttgttgaacgtggtgacgtgatctccgatggtccagaatctccacatgacatt
ctgcgcctgcgtggtgttcatgctgttgctcgttatatcactaacgaagtacaggaagtt
taccgtctgcaaggcgttaagattaacgataaacacattgaagttatcgttcgtcagatg
ctgcgtaaagcaaccattgcgaatgcgggtagttccgaattccttgagggcgagcaggtt
gaatacgcccgcgttaaggtttcgaaccgcaaactggagcaggatggcaaagtaccagct
cttttccagcgtgacctgttgggtatcaccaaggcatcactggcaacagaatccttcatc
tctgcggcatcgttccaggaaacaacccgcgttctgactgaagctgctgttgctggtaaa
cgtgatgaactgcgtggcctgaaagagaacgtcatcgttggtcgcttgatccctgcgggt
acaggttatgcttaccatcaggatcgcattcgtcgtcgtcaagaaaatgaagtggttgaa
gcgccacagtttagcgttgacgaagccactgcaaaccttgctgaattgttgaatgcaggt
tttggtagcagcagcgataacgagtaa
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integrated database retrieval system
