Xenorhabdus griffiniae: QL128_04265
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Entry
QL128_04265 CDS
T09400
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
xgr
Xenorhabdus griffiniae
Brite
KEGG Orthology (KO) [BR:
xgr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
xgr03009
]
QL128_04265 (rlmD)
Enzymes [BR:
xgr01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
QL128_04265 (rlmD)
Ribosome biogenesis [BR:
xgr03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
QL128_04265 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
PCMT
Methyltransf_25
MTS
RrnaAD
TRM5-TYW2_MTfase
Cons_hypoth95
DOT1
Methyltransf_11
Methyltransf_15
DUF4770
CMAS
Methyltransf_23
Motif
Other DBs
NCBI-ProteinID:
WMV74395
LinkDB
All DBs
Position
complement(950591..951928)
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AA seq
445 aa
AA seq
DB search
MVQFYSPNRRSVNRGIISVTADNLDAQGQGIARHQGKTIFIAGLLPGEQAQIQLTEEKRQ
FAKAKVVKRLSDSLHRVAPHCPHFKVCGGCQQQHVAAELQVKTKASVLEHLIQRETGVNI
SAHPVIRSPEYGYRRRARLGLQYHAKQRTLLMGFRQSQTNDLVNIQHCPVMRPELEQLLR
PLHQCLNSLHAVKRLGHVELVLAENGPLVVLRHLDPLKQEDKEILCIFSVQYNVAIYLLG
EEKSLEPLIEEQTAPWYQVNGLKLVFSPQDFIQVNDVVNQQMVAQALAWLDLQPTDRVLD
LFCGMGNFTLPIATQVQATVGVEGVAELVASGQYNAQLNKLNNVDFFHENLESDIHQQPW
AAQGFNKVLLDPARAGAAGVMAHIVKLAPEKVVYVSCNPTTLARDSKVLLAAGYHLVSVR
MLDMFPHTGHLESMALFSSEPMDIE
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atggtgcaattttactccccaaaccgtcgctccgtaaaccgaggcattatttccgttacc
gcagataaccttgatgcacaagggcaaggcattgctcgtcatcagggaaaaacgatcttt
atcgcaggattattgccgggtgagcaggcacaaatccaactgacagaagaaaaacgccaa
tttgctaaagctaaagtcgtgaaaaggctatcagacagcctgcatcgcgtcgcacctcac
tgcccacattttaaagtgtgtggcggatgccaacagcagcatgttgccgctgaactgcaa
gttaaaacgaaggcaagcgtactggaacacctgatccagcgggaaacaggcgttaacatc
agtgcacatcccgtcattcgtagtccagaatatggctatcggcgcagggctagacttggt
ctgcaatatcacgccaaacaacgcacattattgatggggtttcgccagagccagaccaac
gatttggtgaatattcaacattgtcctgttatgcgccctgaattggaacaattattgcgg
ccgttgcatcagtgtctgaatagcctgcacgcagtaaaacgattagggcacgtggaattg
gtgttggctgagaatgggccattagttgtgttgcgtcatcttgatccacttaagcaggaa
gataaggaaatactgtgcattttttcggtgcagtacaatgttgcgatttatctgttgggt
gaagaaaaatcccttgaaccattgattgaagagcaaacagcaccgtggtatcaggtgaat
ggattgaaattggtgttcagcccacaagattttattcaggtgaacgatgtcgttaaccaa
caaatggttgcacaagcgttggcatggctggatttgcaaccaacagacagagtattggat
ctgttttgtggcatggggaattttaccctgccgattgccacgcaagtacaggcaaccgtg
ggtgtggaaggggttgctgagctggtggcgagcgggcaatataacgctcagctcaataaa
cttaataacgtcgatttttttcatgaaaatctggaatcggatattcaccaacagccctgg
gctgcccaagggttcaataaagtgctgctggaccccgcccgcgctggtgcagcgggcgtt
atggcacatattgtaaaattggcccccgaaaaagtggtttacgtttcctgtaatcccaca
acacttgcacgtgacagcaaggtcttgttggcggcgggttatcatcttgtcagtgtgcgg
atgctggatatgtttccacacacaggccatctagaatctatggcgctgtttagcagtgag
ccaatggatatcgagtag
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