Xenorhabdus griffiniae: QL128_07585
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Entry
QL128_07585 CDS
T09400
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
xgr
Xenorhabdus griffiniae
Pathway
xgr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xgr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
QL128_07585 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xgr03400
]
QL128_07585 (sbcB)
Enzymes [BR:
xgr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
QL128_07585 (sbcB)
DNA repair and recombination proteins [BR:
xgr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
QL128_07585 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
QL128_07585 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
QL128_07585 (sbcB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
DUF1122
Motif
Other DBs
NCBI-ProteinID:
WMV73851
LinkDB
All DBs
Position
complement(1633451..1634881)
Genome browser
AA seq
476 aa
AA seq
DB search
MNTSKENQSFYFHDYETFGKHPALDRPAQFAGVRTDSDFNIIEEPLVMYCAPADDYLPDP
EAVMITGITPQLALKKGVNEAEFARQIHEAFSKPNTCILGYNNIRFDDEVSRNIFYRNFY
DPYAYSWQKSNSRWDLLDVLRACYALRPEGIVWPDNEDGLPSFKLEHLTKANGVEHTHAH
DAMSDVYATIAMAKLVKKAQPKLFDYFFQLRNKQKVSHQIDIPQMKPLVHVSGMFGVMRS
NVSLVAPLAWHPSNRNAVIMCDLAGDITPLLELSADELRERLYTRRDELQPDQSPVPIKL
VHINKCPIIAPENTLRPKDAERVGLDRNRCEQNLAILRNNPQIREKVVELFSHPETFPES
DNVDTKLYSGFFSDADKTAMEIIRETSPQNLPALDLTFQDVRITPLLFRYRARNYPATLD
YDEQQRWLRHRQDTLTQENISQYLAVIEELFIEYQSDEEKCRQLKALVDYAIQIAG
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
ttgaataccagtaaagaaaaccaaagtttctactttcatgattatgaaacttttggtaaa
catccggccttagatcgccccgcacaatttgcaggagttcgcactgacagtgatttcaat
atcattgaagaacctttggtgatgtattgtgctcccgctgacgattatcttcccgatcct
gaagctgttatgatcacaggaattactccccagttggcattgaaaaaaggcgttaatgag
gccgaatttgcccgacaaatccatgaagcattcagcaaacccaatacatgtattcttggg
tataacaacattcgttttgatgacgaggtcagccgaaatatcttttatcgtaacttttac
gatccttatgcctatagctggcaaaaaagcaactctcgctgggatttactcgacgtatta
cgtgcctgctatgccttgcggccagaaggcattgtctggccggataatgaagatggatta
cccagtttcaaactagagcatctgacaaaagccaatggcgttgagcatactcatgcccat
gatgcgatgtccgatgtttatgccactatcgcaatggcaaagctggtgaaaaaagctcaa
cctaaattgtttgattattttttccagttaagaaataaacagaaagtcagtcatcaaatt
gatatccctcaaatgaagcctctggttcatgtatctggcatgtttggggttatgcgcagc
aatgttagccttgtcgctcctttggcgtggcatccaagtaatcgtaatgcggttatcatg
tgcgatctggctggtgatatcaccccacttttggaactcagcgcagatgaattacgtgag
cgcttgtatacccgacgggacgaattacagccagatcaaagcccagtccccattaaactc
gtacacattaataaatgcccaatcattgcgccagaaaataccttgcggccaaaagatgca
gagcgagtgggattagatcgcaaccgatgtgagcaaaatctggctatcttgcgcaacaat
ccgcaaatcagggagaaagtcgttgaactgttttctcatccagaaacgtttccagaatct
gataatgtcgatactaagctctatagcggctttttcagcgatgccgataaaacggcaatg
gaaatcatccgagaaacgtctccccagaacttgcctgctttggatttaacattccaggat
gtccgcattacgccgttgttattccgctatcgtgcgagaaactatccagcgacattggat
tatgacgaacaacaacgttggttacgtcatcggcaggatacattaacccaagaaaacatc
agccaatatcttgcagtcattgaagaactttttattgaatatcaatctgatgaagaaaaa
tgtcgccagttaaaagcactggttgattatgcaatccaaatagccggataa
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