Xenorhabdus griffiniae: QL128_10025
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Entry
QL128_10025 CDS
T09400
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
xgr
Xenorhabdus griffiniae
Brite
KEGG Orthology (KO) [BR:
xgr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
xgr03016
]
QL128_10025
Enzymes [BR:
xgr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
QL128_10025
Transfer RNA biogenesis [BR:
xgr03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
QL128_10025
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Paralog
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GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
WMV74292
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All DBs
Position
complement(2225208..2227145)
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AA seq
645 aa
AA seq
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MFQNNPLLAQLKQQLHAQTLRVEGLVKGTEKGFGFLEVDGQKSYFIPPPHMKKVMHGDRI
TAAIHTDKEKEIAEPESLIEPFLTRFVGKVQKKENDNRLWIIPDHPLLKDTIPCRPANHV
DHTFENGDWAVAEMRRHPLKGDRGFHAEITGYITQGDDHYAPWWVTLTRHELEREAPAMT
DCPLDDSSIERIDLTALDFVTIDSATTEDMDDALHITKNDDGSLKLSIAIADPTAYIKAG
SELDKIAYQRSFTNYLPGFNIPMLPRELSDDLCSLRPNVRRPALVCQVSIFEDGQLGDDI
QFFSAWVESKFKLVYDEVSDYLEGQEGWKPESGAVTNQITLLKEMCERRNNWRLQNALVF
KERPDYRFILDENGHFVDIVIEQRRTANRIVEEAMITANLCAAKILRDKLGFGIYNVHTG
FEPTQIEQVVEVLKENGIEANAEALLNLEGFCELRRELDKQSTQFLDSRIRRFQTFAEIK
TEPGPHFGLGFDAYATWTSPIRKYSDIINHRLLKAVIQQVEIEKPTEDLCLQLTDRRRAN
RMAERDVGDWLYARFLQPHAGTDKTFPAEIIDITRGGLRVRLVDNGAIAFVPGPFLHAVR
DELQCSQETGSVLIKGETVHRLNDIINVRIEEVRMETRNIVARPV
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaaaataatccgctgcttgcgcagctaaaacagcaacttcacgctcagaccctg
cgtgtagaaggtttagtcaaagggactgagaaaggttttggatttttagaagtcgacggc
caaaaaagttatttcattccacctccccacatgaaaaaagtcatgcacggagatcggatt
accgcagctatccacacagacaaagagaaagaaattgctgaacctgagtctctgattgaa
cccttcctgactcgttttgtaggaaaggtccagaagaaagaaaatgacaaccgactatgg
attattcctgatcacccattattaaaagacactatcccttgccgcccagcaaaccacgtt
gaccatacctttgaaaacggcgattgggccgtagctgaaatgcgccgccatcctctgaaa
ggtgatcgcggttttcatgccgaaattactggctatattacccaaggtgatgaccactac
gcaccatggtgggtaacattaactcgccacgaactggaacgcgaagcgccagcaatgaca
gattgcccgttggatgatagttccatcgaacgcatcgatctgaccgcactggattttgtc
actatcgacagcgcaacaaccgaagatatggatgatgccctacacatcaccaaaaatgat
gacggcagcctaaaactttctatcgcaattgccgatcctacggcttatatcaaagcaggt
agcgaactggataaaattgcctaccagcgcagtttcaccaattacctgccaggtttcaat
atcccaatgctccctcgtgagctatccgatgacctgtgttctctgcgccctaatgtacgc
cgccctgccctggtttgtcaggtttcaattttcgaagatggtcaattgggtgatgatatt
caattcttctctgcttgggttgagtctaaatttaagctggtttatgacgaagtctcagac
tatttagaaggccaggaaggttggaaaccagaatcaggcgccgtgactaatcaaatcact
ctcctcaaagagatgtgtgaacgtcgcaataactggcgtctgcaaaatgcgctggttttc
aaggaacgtccagattatcgatttatccttgatgaaaacggccattttgttgatatcgtt
attgaacagcgtcgtaccgctaaccgtattgtcgaagaagccatgatcacagcaaactta
tgtgccgctaaaattctgcgtgataagttaggctttggtatttataacgtccacacgggt
tttgaacctacccagattgagcaggtcgttgaagttctcaaggaaaacggcattgaagcg
aatgccgaagcattactgaatctggaagggttctgcgaattgcgccgtgaactggataaa
caatcaacccaattcctggacagtcgcatccgccgtttccaaacatttgctgaaatcaaa
acagaaccaggcccacactttggtttagggtttgatgcttacgcgacctggacatctcct
atccgtaaatatagcgatattatcaatcaccgtttgttgaaagccgttatccagcaagtg
gagatagaaaaaccgactgaagatctttgcctgcaattgactgatcgtcgccgagctaac
cgcatggcagaacgtgatgttggtgattggctctatgctcgtttcttgcaacctcatgct
ggtacagataaaaccttcccggcagaaattatcgatatcacccgtggtggcctgcgagtt
cgattggttgataacggtgccattgctttcgtccctggaccatttttgcatgctgttcgt
gatgaacttcaatgcagtcaagaaacaggttccgtattgatcaagggtgaaacagttcat
cgcctgaacgacatcattaatgtccgtattgaagaggtcagaatggaaacccgcaatatt
gtggcacgccctgtatag
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