Xenorhabdus griffiniae: QL128_10715
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Entry
QL128_10715 CDS
T09400
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
xgr
Xenorhabdus griffiniae
Brite
KEGG Orthology (KO) [BR:
xgr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
xgr03016
]
QL128_10715 (rnd)
Enzymes [BR:
xgr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
QL128_10715 (rnd)
Transfer RNA biogenesis [BR:
xgr03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
QL128_10715 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
WMV70709
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All DBs
Position
complement(2376909..2378069)
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AA seq
386 aa
AA seq
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MYLKDILLFNCDYQLITTDAQLQSACEQAKKHARIALDTEFIRTRTYYPQLGLIQLFDGE
QLSLIDPLGISQWQPFRELLTDPNVLKFIHAGSEDLEVFSNSFQCLPEPMIDTQVLAAFI
GHPMSCGFATLVAEYLHTELDKSESRTDWLARPLSEKQCQYAAADVYYLLPLADILMEKT
RQVGYLDAARDESNLIAQRRKEVLMPEYAYKDIGNAWQLRPRQLACLKKLAAWRLNQARE
RDLAVNFVIREENLWQVARYMPTSLAELNALGLSGQEIRCHGRRLLAMVAESRDIPEEEC
PAQIVNLVDYPGYRKAFKEIKSLVTQVGESHHFSAELLASRRQINQLLCWHWKLKAPEYQ
PELIRGWRGKLLAESIAEILANYSQE
NT seq
1161 nt
NT seq
+upstream
nt +downstream
nt
atgtatttaaaggatattttattgtttaattgtgattatcagttgattactaccgatgcc
caattgcagtcagcctgtgaacaggcaaaaaaacatgcaagaattgcactggatactgaa
tttatacgtacacggacgtattatccccaattaggtttgatacaactatttgatggtgaa
caactttctttgattgatcccctcggaatttcgcaatggcagccctttagggagctattg
actgatccgaatgtattaaagtttatccatgctggcagtgaagatttagaggtttttagt
aatagttttcagtgcttgccagaacccatgattgatactcaggtactggctgcatttatt
ggtcatcctatgtcatgtggctttgcgacattggttgctgagtatttgcatactgaattg
gataaaagtgaatcccgcactgattggttggctcggccgttgagcgaaaagcaatgtcaa
tatgctgcggcagatgtctactatttattaccgctggccgatatcttgatggaaaaaaca
aggcaagtggggtacttggatgcggcaagagatgaaagtaacttgatagcacaacgccgt
aaagaagtattgatgccggaatacgcttataaggatattggtaacgcatggcaattgcgc
ccaaggcaattggcttgtttgaaaaaactggctgcatggcgtttaaatcaggctcgtgag
cgcgatctggcagtcaatttcgtgatccgcgaagaaaatttatggcaggttgcccgttat
atgccaacttctttggcagaattgaatgcgctgggtttgagtggacaagaaattcgttgc
catggtcgccgattattggcaatggttgcagagagcagagatattccagaagaagaatgt
ccggctcaaattgtgaatttagttgattatcctggttatcgtaaggcgtttaaagaaatt
aaatcattggtcactcaggtgggggaatctcatcatttcagtgctgaactgctggcttct
cgccgccaaattaatcagttactttgttggcattggaaattgaaagcgccggagtatcaa
cctgagttaatcagaggttggcgaggcaagttgctggctgaatctattgctgaaatattg
gcaaattattcgcaggaatag
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