Xenorhabdus griffiniae: QL128_19085
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Entry
QL128_19085 CDS
T09400
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
xgr
Xenorhabdus griffiniae
Pathway
xgr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xgr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QL128_19085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xgr03019
]
QL128_19085
03009 Ribosome biogenesis [BR:
xgr03009
]
QL128_19085
Enzymes [BR:
xgr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QL128_19085
Messenger RNA biogenesis [BR:
xgr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QL128_19085
Ribosome biogenesis [BR:
xgr03009
]
Prokaryotic type
rRNA helicases
QL128_19085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
DRTGG
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WMV72174
LinkDB
All DBs
Position
complement(4178436..4180343)
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AA seq
635 aa
AA seq
DB search
MTTETEISFADLGLSAPILSALGDLGYEKPSPIQQQCIPHLLSGRDVLGMAQTGSGKTAA
FSLPLLNNIDAELKAPQILVLAPTRELAVQVAEACSDFSKHMRNVNVVALYGGQRYDVQL
RALRQGPQVVVGTPGRLLDHLKRGTLDLSNLKGLVLDEADEMLRMGFIEDVENIMSQIPA
EHQTALFSATMPEAIRRITRRFMNDPQEVRIQSSVTNRPDISQSYWSVYGMRKNEALVRF
LEAEDFDAAIIFVRTKNATLEVAETLERNGYNSAALNGDMNQALREQTLERLKDGRLDIL
IATDVAARGLDVDRISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRN
VERTMKLTIPEVELPNAELLSQRRLEKFAANVQNQLESSDLDQYRALLSKLGTGDELDME
TLAAALLKMAQGERPLILPPDPVRRPRREFNERDDRRRNSNSNGFGERDRGERDRGDRPR
RERRDVGDMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFATHSTIELPKGM
PGELLSHFTRTRILNKPMNMQLMGDAQPFERRERRGGRNGNGGNGGNGPRRDRDGFGNNG
GRRFNNERRGGGERGTFRGRGNDEAPRRRQSSGNV
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgaccactgagactgaaatctcttttgctgatttaggtttatcggcacctatcctttct
gcgttgggagacttgggctatgagaagccttctcctatccaacaacaatgtattcctcac
ctgctgagtggccgtgatgtgctgggtatggcacagacgggcagcggtaagacagcggct
ttcagcttgcctttattgaataacattgatgctgaacttaaagcgccacaaattcttgtg
ttagcgccaacccgtgaactggcggtgcaggttgctgaagcgtgttcagatttttccaaa
catatgcgcaatgtgaatgttgttgcactttacggtggacagcgttatgacgttcagtta
cgtgctttgcgtcaggggccacaagttgtggtgggtacaccaggacgtttgcttgaccat
ctgaagcgtggcacattggatctgtccaacctgaaaggtttggtattagatgaagctgac
gaaatgttgcgtatgggctttatcgaagatgttgaaaacatcatgagccagatccctgct
gaacatcaaaccgcgctgttctctgcgacaatgccagaagcgatccgccgtattacccgt
cgtttcatgaatgatccacaggaagttcgcattcagagcagtgtgacaaaccgtcctgac
attagccagagctactggtctgtttacggcatgcgcaaaaatgaagcgttggtgcgtttc
ctggaagcagaagattttgatgctgcgattattttcgtgcgtaccaagaatgcaacgttg
gaagttgcagaaacgctggagcgtaacggctacaactccgcggcactgaatggtgacatg
aaccaggctctgcgtgaacagacacttgagcgcttgaaagatggccgtttggacattctg
attgcgacggatgttgctgctcgtggtttggatgttgatcgtattagcctggtggttaac
tacgacattccaatggatgctgaatcttatgtacaccgtatcggtcgtactggtcgtgcg
ggtcgtgcgggtcgtgcgctgttgtttgttgaaaaccgcgaacgtcgtttgctgcgtaac
gttgaacgcaccatgaaactgaccatcccagaagttgaactgccaaacgcagagcttctg
agccagcgtcgtctggagaaatttgcggctaatgttcagaatcaactggaaagcagcgat
ctggatcaataccgtgccttgctgtctaagctgggtactggtgatgagctggatatggaa
acactggcagcagccttgctgaaaatggcacaaggtgagcgcccacttattctgccacct
gatccagtgcgtcgccctcgccgtgaattcaacgagcgtgatgatcgtcgtcgcaatagc
aatagtaatggctttggtgagcgtgacagaggtgagcgtgacagaggtgatcgtcctcgt
cgtgagcgtcgtgacgtgggtgatatggaactgtatcgcattgaagttggccgtgatgat
ggtgttgaagttcgccatattgtgggtgcgattgcaaatgaaggcgatatcagcagccgt
tatatcggtaatatcaaactgtttgctacccactctacgattgagctgccaaaaggtatg
ccaggggagttgctgtctcactttacccgtactcgtattctgaacaaaccaatgaatatg
cagttgatgggagacgcgcaaccctttgagcgccgtgagcgtcgtggtggccgcaatggt
aatggcggtaatggtggcaatggtccacgtcgtgaccgtgatggtttcggtaataacggt
ggtcgtcgttttaacaacgaacgtcgtggtggtggtgagcgtggtactttccgcggtcgc
ggcaacgatgaagcgccacgtcgccgtcaaagcagtggtaatgtataa
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