Xanthomonas hawaiiensis: PG878_03310
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Entry
PG878_03310 CDS
T09990
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
xha
Xanthomonas hawaiiensis
Pathway
xha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xha00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PG878_03310 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xha03019
]
PG878_03310 (rhlB)
Enzymes [BR:
xha01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PG878_03310 (rhlB)
Messenger RNA biogenesis [BR:
xha03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PG878_03310 (rhlB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
RhlB
Helicase_C
ResIII
Cas3-like_C_2
Helicase_C_2
baeRF_family2
Motif
Other DBs
NCBI-ProteinID:
WNH45510
LinkDB
All DBs
Position
759840..761588
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AA seq
582 aa
AA seq
DB search
MSDKPLTDVTFSAFELQPALLAGLESAGFTRCTPIQALTLPVALPGRDVAGQAQTGTGKT
LAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGSELGLRFALVYG
GVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDI
RFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETESITAARVRQRIYFPS
DEEKLTLLLGLLSRSEGARTMVFVNTKAFVERVARALERNGYRVGVLSGDVPQKKRETLL
NRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISF
ACERYAMSLPDIEAYIEQKIPVEPVTAELLVALPRTPRAPVEGEAAEADGEESIGEIFRE
ARAQREADEQRRGGGRGKPGGGRSGPGGRGESRSADGKPRRPRTPRPADAAPADGSAPAA
AAPAPAPKPPRAAPADGAVPAVEGERPPRKRRRRRGGRPLEGAEGAPAGNGSAAPATAAP
AKPVQVVATPVKAARQAERGAATNDSFLTRLGRKLRSLVSSS
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacaaaccgctgaccgatgtgactttttccgcgttcgaactgcagcccgcgctg
ctcgcaggcctcgaaagcgccggcttcacccgctgcaccccgatccaggcgctgaccctg
ccggtggcccttcccggccgcgacgtggccggccaggcccagaccggtaccggcaagacc
ctggcgttcctggtggcggtgatgaaccgcctgctcagccgcccggcgctggccgaccgc
aagccggaggatccgcgcgcgctgatcctggcaccgacccgcgaactggcgatccagatc
cacaaggatgcggtcaagttcggctccgagctgggcctgcgcttcgccctggtctacggc
ggcgtggactacgacaagcagcgcgaactgctgcagcagggcgtggacgtgatcatcgcc
acccccggccgcctgatcgactacgtcaagcagcacaaggtggtgtcgctgcacgcctgc
gagatctgcgtgctcgacgaagccgaccgcatgttcgacctgggcttcatcaaggacatc
cgcttcctgctgcggcgcatgcccgagcgcggcacccggcagaccctgctgttctcggcc
accctcagccaccgcgtgctggagctggcctacgagcacatgaacgagccggaaaagctc
gtggtcgagaccgaaagcatcaccgccgcgcgcgtgcgtcagcgcatctacttcccctcc
gacgaggagaagctgaccctgctgctgggcctgctgtcgcgcagcgagggcgcgcgcacc
atggtgttcgtcaacaccaaggccttcgtcgagcgcgtggcgcgcgcgctggagcgcaac
ggctaccgggtcggcgtgctgtccggcgacgtgccgcagaagaagcgcgagaccctgctc
aaccgcttccagaagggccagttggagatcctggtggccaccgacgtggctgcgcgcggc
ctgcacatcgacggggtcaagtacgtctacaactacgacctgccgttcgacgccgaggac
tacgtgcaccgcatcggccgcaccgcgcggctgggcgaggaaggcgacgcgatcagcttc
gcctgcgagcgctacgcgatgagcctgccggacatcgaggcctatatcgagcagaagatc
ccggtcgagccggtcaccgccgagctgctggtggcgctgccgcgcaccccgcgtgcgccg
gtggagggcgaggccgccgaggccgatggcgaggagagcatcggcgagatcttccgcgag
gcccgcgcccagcgcgaggccgacgagcagcggcgtggcggcggtcgcggcaagcccggc
ggcggccgcagcggcccgggcggccgtggcgagtcgcgcagcgccgacggcaagccgcgg
cgtccgcgcacgccgcgtccggccgatgccgctcccgcggacggtagcgcgccggccgcc
gccgcaccggcgcccgcgcccaagccgccgcgcgctgcgccggccgacggcgcggtgcct
gcggtcgaaggcgagcgtccgccgcgcaagcgccgtcgccgtcgcggcgggcgcccgctg
gaaggcgccgagggcgcaccggccggcaacggcagcgccgcgccggcgaccgcggccccg
gccaagccggtgcaggtcgtggccacgccggtcaaggccgcgcgccaggccgagcgtggt
gcggcgaccaacgattcgttcctgacccgcctgggtcgcaagctgcgctcgctggtgtcc
agctcctga
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