Xanthomonas hawaiiensis: PG878_04215
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Entry
PG878_04215 CDS
T09990
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
xha
Xanthomonas hawaiiensis
Pathway
xha03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
xha00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PG878_04215 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xha03021
]
PG878_04215 (rpoC)
03400 DNA repair and recombination proteins [BR:
xha03400
]
PG878_04215 (rpoC)
Enzymes [BR:
xha01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PG878_04215 (rpoC)
Transcription machinery [BR:
xha03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PG878_04215 (rpoC)
DNA repair and recombination proteins [BR:
xha03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PG878_04215 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
WNH45676
LinkDB
All DBs
Position
967995..972212
Genome browser
AA seq
1405 aa
AA seq
DB search
MKDLLNLFNQQRQTLDFDAIKIALASPDLIRSWSFGEVKKPETINYRTFKPERDGLFCAA
IFGPIKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRERMGHIDLASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFEAYVVTEPGLTALERRQLLTEEQYLTARQEHGDDFDAAM
GAEAVYELLRTIDLQSEMTRLREEIASTGSETKLKRLTKRIKLIEAFIESGNRPEWMVMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLLELNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LRLHECGLPKKMALELFKPFVFAKLQRRGLATTIKAAKKLVEREEAEVWDILEEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMSRALENKKGEGMVFANIAEVKRAYDNR
AVELHAKVKVRITETVIDEEGNRSKKTSIVDTTIGRALLAEILPEGLPFALANTELTKKN
ISRLINSSYRQLGLKDSVVFADKLMYTGFAYATRAGVSIGIDDMLIPSEKRGILGEAEQE
VLEIQEQYQSGLVTAGERYNKVVDIWSRTNERIAKAMMDTIGTEKVVNAKGETIDQKSMN
SLYIMADSGARGSQAQIRQLAGMRGLMARPDGSIIETPIKANFREGLNVQEYFNSTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVITEPDCGTTDGLTMTPIVEGGDVVEPLRDRVL
GRVVAEDVFLPGNDEDPIVTRNTLLDEQWVAKLEEAGVQSVKVRSTITCESAFGVCARCY
GRDLARGHLVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAVDNITVKTTGSIK
FNNLKSVEHANGSLVAVSRSGELSVLDGHGRERERYKLPYGATITAKDGDAVKAGQSVAN
WDPHNHPIVSEVAGFIRFIDFIDGVTVIEKTDELTGLASREITDPKRRGTQAKDLRPIVR
IVDAKGNDLTIPGTDLPAQYLLPPRSIVNLQDGAPVGVGDVVAKIPQEASKTRDITGGLP
RVADLFEARKPKDPAILAERSGIISFGKDTKGKQRLIIKDTDGSEHEELIPKYRQIIVFE
GEHVAKGETVVDGEPSPQDILRLLGVEPLAAYLVKEIQDVYRLQGVKINDKHIEVITRQM
LRKVEITDQGNSKFLNGEQAERQRVIEENARLVTRNELPAKYEPVLLGITKASLATESFI
SAASFQETTRVLTEAAVRGTSDTLRGLKENVIVGRLIPAGTGLAYHNTRRRNASGLTESE
MQTLSGGSAEPAVETSAPAAAGSEE
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacctgctcaacctcttcaaccagcagcgccagacgctggacttcgacgcgatc
aagatcgcgctggcctcgccggacctgatccgttcctggtccttcggcgaagtgaagaag
ccggaaaccatcaactaccggaccttcaagcccgagcgcgacggcctgttctgcgccgcc
atcttcggcccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcatgaagcac
cgcggcgtggtctgcgagaagtgcggcaccgaagtgaccctggccaaggtgcgtcgcgag
cgcatgggccacatcgacctggcttcgccggtcgcgcacatctggttcctgaagtcgctg
ccgtcgcgcatcggcctgatgctggacatgaccctgcgcgacatcgagcgcgtgctgtac
ttcgaagcctacgtggtgaccgagccgggcctgaccgccctggagcgccgccagctgctg
accgaagagcagtacctgaccgcgcgccaggagcacggcgacgacttcgacgccgccatg
ggcgccgaggccgtgtacgaactgctgcgcaccatcgacctgcagtcggaaatgacccgc
ctgcgcgaagagatcgccagcaccggttcggaaaccaagctcaagcgcctgaccaagcgc
atcaagctgatcgaggccttcatcgagtccggcaaccgtccggagtggatggtgatgacc
gtgctgccggtgctgccgccggatctgcgtccgctggtgccgctggacggtggccgcttc
gcgacctccgatctgaacgacctgtatcgccgcgtcatcaaccgcaacaaccgcctgcgc
cgcctgctcgaactgaacgcgccggacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaatcggtcgatgcgctgctggacaacggccgtcgcggccgcgccatcaccggcaccaac
aagcgcccgctgaagtcgctggccgacatgatcaagggcaagcagggccggttccgccag
aacctgctcggcaagcgcgtggactactccggccgttcggtcatcgtggtcggcccgacc
ctgcgcctgcacgagtgcggcctgccgaagaagatggcgctggagctgttcaagccgttc
gtgttcgccaagctgcagcgtcgcggcctggccaccaccatcaaggccgccaagaagctg
gtcgagcgcgaagaagccgaagtctgggacatcctggaagaggtgatccgcgagcacccg
gtgctgctgaaccgtgcgccgaccctgcaccgcctgggcatccaggcgttcgagccggtg
ctgatcgaaggcaaggcgatccagctgcacccgctggtctgcaccgcgttcaacgccgac
ttcgacggtgaccagatggccgtgcacgtgccgctgtcgctggaagcgcagctggaagcg
cgcgcgctgatgatgtccaccaacaacatcctgtcgccggccaacggcgagccgatcatc
gtgccgtcgcaggacgtggtgctgggtctgtactacatgagccgcgccctggagaacaag
aagggcgagggcatggtgttcgctaacatcgccgaagtgaagcgcgcctacgacaaccgt
gcggtcgaactgcacgccaaggtcaaggtccgcatcaccgagacggtgatcgacgaagaa
ggcaaccgcagcaagaagacctcgatcgtggacaccacgatcgggcgcgcgctgctggcc
gagatcctgccggaaggcctgccgttcgcgctggccaacaccgagctgaccaagaagaac
atcagccgcctgatcaactccagctaccgccagctgggtctgaaggacagcgtggtgttc
gccgacaagctgatgtacaccggcttcgcctacgccacccgcgctggcgtgtcgatcggc
atcgacgacatgctgatcccgtcggagaagaggggcatcctcggcgaagccgagcaggaa
gtgctggaaatccaggagcagtaccagtccggtctggtcaccgccggcgagcgctacaac
aaggtcgtggacatctggtcgcgcaccaacgagcgcatcgccaaggcgatgatggacacc
atcggcaccgagaaggtggtcaacgccaagggcgagaccatcgaccagaagtcgatgaac
tcgctgtacatcatggccgactccggcgcgcgtggttcgcaggcgcagatccgtcagctg
gccggcatgcgcggcctgatggcccgcccggacggctcgatcatcgagacgccgatcaag
gcgaacttccgcgaaggcctgaacgtgcaggagtacttcaactccacccacggtgcccgt
aagggtctggccgataccgcgctgaagaccgccaactccggttacctgacccgtcgcctg
gtcgacgtggcgcaggacgtggtcatcaccgagccggattgcggcaccaccgacggcctg
accatgaccccgatcgtggaaggcggcgacgtggtcgagccgttgcgcgaccgcgtgctc
ggccgtgtggtggccgaggacgtgttcctgccgggcaacgacgaggatccgatcgtcacc
cgcaacaccctgctcgacgagcagtgggtggccaagctggaagaggccggcgtgcagtcg
gtcaaggtccgctcgacgatcacctgcgaatcggcgttcggcgtgtgcgcgcgctgctac
ggccgcgacctggcccgtggccacctggtcaacatcggcgaagcggtgggcgtcatcgcc
gcgcagtcgatcggcgagccgggtacccagctgaccatgcgtaccttccacatcggcggc
gcggcctcgcgtgcggcggcggtggacaacatcacggtcaagaccaccggttcgatcaag
ttcaacaacctcaagtcggtcgagcatgccaacggctcgctggtggcggtgtcgcgttcg
ggcgaactgtcggtgctcgacggccacggccgcgagcgcgagcgctacaagctgccgtac
ggcgccaccatcaccgccaaggacggtgatgcggtcaaggccggccagtcggtggcgaac
tgggatccgcacaaccacccgatcgtgtcggaagtggccggtttcatccgcttcatcgac
ttcatcgacggcgtcaccgtcatcgagaagaccgacgaactgaccggcctggcctcgcgc
gagatcaccgatccgaagcgtcgcggtacccaggccaaggacctgcgcccgatcgtgcgc
atcgtcgacgccaagggcaacgacctgaccatcccgggcaccgatctgccggcgcagtac
ctgctgccgccgcgctcgatcgtcaacctgcaggacggcgcgccggtcggcgtgggcgac
gtggtcgccaagatcccgcaggaagcgtccaagacccgcgacatcaccggtggtctgccg
cgcgtggccgacctgttcgaagcgcgcaagccgaaggatccggcgatcctggccgagcgt
tcgggcatcatcagcttcggcaaggacacaaagggcaagcagcgcctgatcatcaaggac
accgacgggtcggagcacgaagagctgatcccgaagtaccgccagatcatcgtgttcgaa
ggcgagcacgtggccaagggcgaaaccgtggtggacggcgagccgagcccgcaggacatc
ctgcgtctgctgggcgtcgagccgctggccgcgtacctggtcaaggaaatccaggacgtg
taccgcctgcagggcgtgaagatcaacgacaagcacatcgaggtcatcacccggcagatg
ctgcgcaaggtcgagatcaccgaccagggcaacagcaagttcctcaacggcgagcaggcc
gagcgccagcgcgtcatcgaggagaacgcccgcctggtgacccgtaacgagctgccggcg
aagtacgagccggtgctgctgggcatcaccaaggcgtcgctggcgaccgagtcgttcatc
tcggccgcgtcgttccaggagaccacccgcgtcctcaccgaggcggcggtccgcggcacc
agcgacacgctgcgcggcctgaaggaaaacgtgatcgtgggtcgcctgatcccggccggt
accggcctggcgtaccacaacacgcgccgccgcaacgccagcggcctgaccgagtcggag
atgcagaccctgtccggcggcagcgccgagccggcggtcgagacctccgccccggcggcg
gccggcagcgaagagtaa
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integrated database retrieval system
