Xanthomonas hawaiiensis: PG878_06330
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Entry
PG878_06330 CDS
T09990
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
xha
Xanthomonas hawaiiensis
Brite
KEGG Orthology (KO) [BR:
xha00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xha03019
]
PG878_06330 (hrpA)
Enzymes [BR:
xha01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PG878_06330 (hrpA)
Messenger RNA biogenesis [BR:
xha03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
PG878_06330 (hrpA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
WHD_HA2
nSTAND3
AAA_30
SRP54
NACHT
T2SSE
nSTAND_NTPase5
AAA_25
AAA_23
ABC_tran
PhoH
TsaE
Myosin_head
Motif
Other DBs
NCBI-ProteinID:
WNH46067
LinkDB
All DBs
Position
1430303..1434436
Genome browser
AA seq
1377 aa
AA seq
DB search
MNAIEKPSVPARLRDRRAAIDGALTRDRGRLLGLWSRWQAAPGNAALETAFEQALQASQA
RCAARAAQQPAITLDPQLPIAREAERIVALIREHQVVVIAGETGSGKTTQLPKLCLAAGR
GAAGMIGCTQPRRIAARAVASRVAEELRTPVGETVGFQVRFNDRVGEQTRIKFMTDGILL
AEIASDRWLSSYDTIIVDEAHERSLNIDFLLGYLKQLLRKRPDLKVIVTSATIDTARFAA
HFDDAPVISVEGRTYPVEVRYRPLEEPGGEEADAESGDNAGDRTVNQAIVAAIDEITRLD
PRGDVLVFLPGEREIRDAHHALERRKYRETEVLPLYARLSNADQDRVFNPGPRRRLVLAT
NVAETSLTVPRIRYVVDPGYARVKRYSPRQKLDRLHIEPISQASANQRKGRCGRIAEGIC
YRLYAEADFQARPAFTDPEIRRSSLAGVILRMLQLGLGRIEDFPFLEPPDERAVADGWQQ
LVELGAVGEPDRHGLRKLTEIGRKMARLPVDVKLARMLVAAQQHGCLRPMLVIAAFLGIQ
DPRERPPEAREAADNAHAKFADARSEFVGILRLWDGYRQAHEDLTQSKLRDWCGRHFLGF
LRMREWRELHRQLHLLCAELGWTEEPAEASLRPLLAGASAPAPARDAETAARATRGQLHR
AARLAREGRGTGTPSPVPAAQPAPPAPAEADEAPRASERERAAAYQALHRALLAGLPTQV
GHRTEKGDFLAPRQRRFLLFPGSALARKPPPWVLPATLLDTQKVWGLTNAAIEPDWVIAE
LPHLLARKHFDPHWSRAQGQVLASEQISLFGLVLAPKKPVHYGRIDPSGAHELFVRQGLV
PGEINTRASFVADNQKVLAQAHEEEAKLRRAGIVADEDWQARWYLDRVPGEIHSASGLDA
WWKALAPEQRRALHWSLADLLPGEGSAAERYPTYFPLGDARLPLHYRFEPGAADDGVTLE
VPVHLLNALDPARLSWLAPGFVADKAAALIRSLPKALRRNYVPAPDFARAFYEAFPQPSA
DDLRGELARFLQRATGAPLSALEFDEGTLEPHLRMNLRLRDDAGKVLAESRDLDALRARF
GERAGQAFAARAGRAMAATGLREFPATPIPLQVPGEAGVPAYPALVDEGDSAALRIFADR
AQAEAAHPRGVRRLLEIALADKVKQARKQLPVSPKTGLLYAAIESQERLRGDLVEAALNA
LLEQGLEAIRDADSFAQRRDAAAKQLFGEAMERLKLAEAIMGAAAELKPQLESPLMGWAS
GNLDDLRAQLAALLHPGFLRETPATALAQFPRYLRAMILRAERAKRDPARDQARMLELKP
FVDALADAAAAGRGDTPEWQALRWDLEELRVSLFAQELGARAGISAKKLAQRVAQLR
NT seq
4134 nt
NT seq
+upstream
nt +downstream
nt
atgaacgctatcgaaaaaccttccgtgccggcacgcctgcgcgaccgccgcgccgcgatc
gacggcgcgctgacccgcgaccgtggccgcctgctgggcctatggtcgcgctggcaggcc
gcgcccggcaatgccgcgctggagacggcgttcgaacaggcgctgcaggcgtcgcaggcg
cgttgcgccgcgcgcgcggcgcagcagccggcgatcacgttggatccgcaactgccgatc
gcgcgcgaggccgagcgcatcgtcgcgctgatccgcgagcaccaggtggtggtgatcgcc
ggcgagaccggttcgggcaagaccacgcagttgccgaagctgtgcctggccgccggacgc
ggcgccgccggcatgatcggctgcacccagccgcggcgcatcgccgcgcgcgcggtggcc
agccgcgtggccgaggaactgcgcacgccggtgggcgagacggtgggcttccaggtgcgc
ttcaacgaccgggtcggggagcagacccggatcaagttcatgaccgacggcatcctgctg
gccgagatcgccagcgaccgctggctgtccagctacgacacgatcatcgtcgacgaggcg
cacgagcgcagcctcaacatcgatttcctgctcggctacctgaagcagttgctgcgcaag
cgcccggatctgaaggtcatcgtgacctccgcgacgatcgacaccgcgcgcttcgctgcg
catttcgacgatgcgccggtgatcagcgtggaaggccgtacctatccggtggaagtgcgc
tacaggccgctggaagagccgggtggcgaggaggccgacgccgagagtggcgacaacgcc
ggcgaccgcacggtcaaccaggcgatcgtggcggcgatcgacgaaatcacccggctggat
ccgcgcggcgacgtgctggtgttcctacccggcgagcgcgagatccgcgatgcgcaccat
gcgctggaacggcgcaagtaccgcgagaccgaggtgctgccgctgtacgcgcggctctcc
aacgccgaccaggaccgggtgttcaatcccggcccgcggcggcggctggtgctggccacc
aatgtggccgaaacctcgctgacggtgccgcggatccgctacgtggtcgaccccggctat
gcgcgggtcaagcgctacagcccgcggcagaagctcgaccggctgcacatcgagccgatc
tcgcaggccagcgccaaccagcgcaagggccgctgcggccgcatcgccgagggcatctgc
taccggctgtatgccgaggccgatttccaggcgcggccggcgttcaccgatccggagatc
cgccgctccagcctggccggggtgatcttgcgcatgctgcagctggggctgggccggatc
gaggatttcccgttcctggaaccgcccgacgagcgcgcggtggccgatggctggcagcaa
ttggtggaactgggcgcggtcggcgagccggaccgccatggcctgcgcaagctcaccgag
atcggccgcaagatggcgcggctgccggtggacgtgaagctggcgcggatgctggtggcg
gcgcagcagcacggctgcctgcggccgatgctggtgattgccgcgttcctgggcatccag
gacccgcgcgagcgtccgccggaggcgcgcgaggccgccgacaacgcgcacgccaagttc
gccgatgcgcgctcggagttcgtcggcatcctgcgcctgtgggacggttaccggcaggcg
cacgaggacctgacccagtccaagctgcgcgattggtgcggacggcatttcctcggcttc
ctgcgcatgcgcgagtggcgcgaactgcaccgccaactgcatctgctgtgcgcggaactg
ggctggaccgaggagccggcggaggcctccctgcggcctctgctggccggcgcttccgca
cccgcgccggcgcgtgatgccgagaccgcggcgcgcgcgacccgcgggcagttgcaccgc
gccgctcggctggcgcgcgaaggccgcggcaccggcacgccgtcgcccgtgccggcggct
cagcccgcgcccccggcgcctgccgaggcagacgaggcgccgcgcgccagcgaacgcgag
cgtgccgcggcctaccaggcgctgcaccgcgcgctgctggccggcctgccgacccaggtc
ggccaccgcaccgaaaagggcgatttcctggcgccgcggcagcgtcgcttcctgctgttc
cccggttcggcgcttgcccgcaagccgccgccgtgggtgctgccggcgacgctgctggac
acgcagaaggtgtggggcctgaccaatgccgcgatcgagccggattgggtgatcgccgag
ctgccgcatctgctggcgcgcaagcatttcgatccgcactggtcgcgcgcgcaggggcag
gtgctggcctccgagcagatcagcctgttcgggctggtgctggcgccgaagaagccggtg
cattacggccgcatcgatccgtccggcgcgcacgagctgttcgtgcgccagggcctggtg
ccgggcgagatcaacacccgcgccagcttcgtcgccgacaaccagaaagtgttggcgcag
gcgcacgaggaagaggccaagctgcgccgtgccggcatcgtcgccgacgaggactggcag
gcgcgctggtacctggaccgggttcccggcgagatccactccgcctcgggcctggatgcc
tggtggaaggcgctggcgccggaacagcggcgcgcgctgcactggtcgctggccgacctg
ctgccgggcgagggcagcgcggccgagcgttatcccacgtacttcccactgggcgatgcg
cggctgccgctgcattaccgtttcgaaccgggcgcggccgacgacggcgtgaccctggag
gtgccggtccatctgctcaacgccctggatccggcgcggctgtcgtggctggcgccgggc
ttcgtcgccgacaaggcggcggcgctgatccgcagcctgcccaaggcgctgcgccgcaac
tacgtgccggcgccggacttcgcccgcgcgttctacgaggcgttcccgcagcccagcgcc
gacgacctgcgcggcgaactggcgcgcttcctgcagcgcgccaccggtgcgccgctgagt
gcgctggagttcgacgagggcacgctggagccgcatctgcgcatgaacctgcgcctgcgc
gacgacgccggcaaggtgctggccgaatcgcgcgatctggacgcgctgcgcgcgcgcttc
ggcgagcgtgccgggcaggccttcgcggcgcgggccggccgtgccatggccgcgaccggg
ctgcgcgaattcccggccacgccgatcccgctgcaggtgccgggcgaagccggcgtgccg
gcgtatcctgcgctggtggacgagggcgacagcgccgcgctgcgcatcttcgccgaccgc
gcgcaggccgaagccgcgcatccgcgcggcgtgcgccggttgctggagatcgctctggcc
gacaaggtcaagcaggcgcgcaagcagttgccggtgtcgcccaagaccgggctgctgtac
gcggcgatcgagtcgcaggaacgcctgcgcggcgacctggtggaggcggcgttgaatgcg
ctgctggagcaggggctggaggcgatccgcgatgcggacagtttcgcccagcgtcgcgat
gccgctgccaagcagctgttcggcgaggcgatggaacggctgaagctggccgaggcgatc
atgggcgcggcggcggagctgaagccgcaactggaatcgccattgatgggctgggccagc
ggcaatctcgacgacctgcgcgcgcagttggcggccttgctgcatccgggcttcctgcgc
gaaaccccggccaccgcgctggcgcagttcccgcgctatctgcgcgcgatgatcctgcgt
gccgagcgcgccaagcgcgatccggcccgcgaccaggcgcggatgctggaactgaagccg
ttcgtcgatgcactggccgacgcggccgcggccggacgcggcgacacgccggagtggcag
gcgctacgctgggatctggaagaactgcgggtgtcgctgttcgcccaggaactgggcgcc
cgtgccggcatctcggcgaagaagctggcgcagcgggtggcgcaactgcggtga
DBGET
integrated database retrieval system
