Xanthomonas hawaiiensis: PG878_13130
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Entry
PG878_13130 CDS
T09990
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
xha
Xanthomonas hawaiiensis
Pathway
xha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xha00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PG878_13130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xha03019
]
PG878_13130
03009 Ribosome biogenesis [BR:
xha03009
]
PG878_13130
Enzymes [BR:
xha01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PG878_13130
Messenger RNA biogenesis [BR:
xha03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PG878_13130
Ribosome biogenesis [BR:
xha03009
]
Prokaryotic type
rRNA helicases
PG878_13130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
adh_short
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
WNH43469
LinkDB
All DBs
Position
complement(3050304..3052262)
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AA seq
652 aa
AA seq
DB search
MSQDTPAPLLFADLGLSPAVMKAVADVGYESPSPIQAATIPALLTGRDLLGQAQTGTGKT
AAFALPILSRLDFAQRKPQALVLAPTRELAIQVAEAFHRYAAAIPGFQVLPVYGGQPYVQ
QLSALKRGVHVVVGTPGRVIDHLDRGTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKL
PESRQVALFSATMPPAIKRIAQTYLNDPAEVIIASKTTTSANIRQRYWAVSGLHKLDALT
RILEVEPFDAMIIFARTKAGTDELAQKLQARGLAAAAINGDIQQAQRERVIQQLKDGKLD
VLVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFVSPRERGML
RAIERATRQPIEEMQLPSVDAVNDQRVSRFMEKISETIASGGIDMYRDLLQKFEAEKNVP
MVEVAAALARLLQGETPLLLAPDRPRPPQGERFERRERPERGERPDRPRFEPKFEREPRA
PRRDDGERPARPAPAARGEDFDYHRDVGSFEAPRRDKAPKAPRGAPEVGMETYRIEVGHQ
HGVKPANIVGAIANEAGLESKYIGRIDIHDDHSVLDLPADMPRELLTHLKKVWVSGQQLQ
MRKLEGDDAGGAPFKPKFARTGKPGGKPNAAGPRPAGRFAADRPPRKGPPKR
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgtcccaagatacccccgcgccgctgctgttcgcagatctcggcctctcccctgctgtg
atgaaggcggtggccgacgtcggctacgagtcgccgtcgccgatccaggccgccaccatc
ccggcgctgctgaccggccgcgacctgctcggccaggcgcagaccggcaccggcaagacc
gccgcgttcgcgctgccgatcctgtcgcggctggatttcgcccagcgcaagccgcaggcg
ctggtgctggcgcccacccgcgaactggcgatccaggtggccgaggcgttccatcgctac
gccgcggcgatccccggcttccaggtgctgccggtgtacggcggccagccctacgtgcag
cagctgtcggcgctcaagcgcggcgtgcacgtggtggtgggcaccccggggcgggtgatc
gatcacctggaccgcggcaccctggacctgtccgaactgaagacgctggtgctcgacgaa
gccgacgagatgctgcgcatgggcttcatcgacgacgtcgaggcggtgctgaagaagctg
ccggagtcgcgccaggtggcgctgttctcggcgaccatgccgccggcgatcaagcgcatc
gcgcagacctatctgaacgacccggccgaggtgatcatcgcctccaagaccaccacgtcg
gccaatatccgccagcgctactgggcggtgagcgggctgcacaagctcgacgcgctgacc
cgtatcctggaggtcgagccgttcgacgcgatgatcatcttcgcgcgcaccaaggccggc
accgacgaactggcgcagaagctgcaggcgcgcggcctggccgcggcggcgatcaacggc
gacatccagcaggcgcagcgcgagcgggtgatccagcagctcaaggacggcaagctcgac
gtcctcgtcgccaccgacgtggccgcgcgcggcctggacgtggagcgaatcagccacgtg
ctgaactacgacatcccctacgacaccgaaagctacgtgcaccgcatcggccgcaccggc
cgggccgggcgcagcggcgaggcgatcctattcgtcagcccgcgcgagcgcggcatgctg
cgcgcgatcgagcgcgccacgcgccagccgatcgaggaaatgcagctgcccagcgtggac
gcggtcaacgaccagcgcgtcagccgcttcatggagaagatcagcgagaccatcgccagc
ggcggcatcgacatgtatcgcgacctgctgcagaaattcgaggccgagaagaacgtgccg
atggtggaagtggccgcggcgctggcgcgcctgctgcagggcgagacgccgctgctgctg
gccccggaccgtccgcgcccgccgcagggtgagcgcttcgagcgccgcgagcggccggag
cgtggcgagcgcccggaccgtccccgcttcgagccgaagttcgagcgcgagccgcgtgcg
ccgcgccgcgacgatggcgagcgtccggcgcgtccggcgccggctgcgcgcggcgaggat
ttcgactaccaccgcgatgtcggcagcttcgaggcgccgcgccgcgacaaggcgccgaaa
gcgccgcgcggcgcgccggaagtgggcatggagacctaccgcatcgaggtcggccaccag
cacggggtcaagccggccaacatcgtcggcgcgatcgccaacgaagccgggctggaaagc
aagtacatcggccgcatcgacatccacgacgaccactcggtgctggacctgccggcggat
atgccgcgcgagctgctgacgcacctgaagaaggtctgggtgtccggccagcaactgcag
atgcgcaagctcgaaggcgacgatgccggcggcgcgccgttcaagccgaagttcgcccgt
accggcaagcccggcggcaagcccaacgccgccggcccgcgcccggccggccgcttcgcc
gccgaccgcccgccgcgcaaggggccgccgaagcgctga
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