Xanthomonas hydrangeae: LMG31886_01160
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Entry
LMG31886_01160 CDS
T07925
Symbol
ligD
Name
(GenBank) Multifunctional non-homologous end joining protein LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
xhd
Xanthomonas hydrangeae
Pathway
xhd03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
xhd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LMG31886_01160 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xhd03400
]
LMG31886_01160 (ligD)
Enzymes [BR:
xhd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LMG31886_01160 (ligD)
DNA repair and recombination proteins [BR:
xhd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LMG31886_01160 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
CAD7720260
LinkDB
All DBs
Position
LMG31886:136311..139085
Genome browser
AA seq
924 aa
AA seq
DB search
MSLHDYNAKRRFDQTPEPAGETPARANTQPIFVVQLHHASSRHYDFRLEADGVLKSWAVP
KGPSLRVGEKRLAVQVEDHPLSYASFEGDIPQDHYGAGHVDVFDHGHWQCEGDALAALEA
GKLEFELQGTLLRGGFALVRTQMRGGKPQWLLFKRTDAYAADLDADALVAQQSAGASGVA
TSATRAKTASVTTRGKASRAQRVPPEAIAGTSTVTSKRVRSGRAESKQWRTRALALDGAR
DAPCPTELRAQLTLLREQAPEGERWLHEIKWDGYRLLADMVDGNVQLRSRNDQAWTQRFP
DVVRALQALPVRDARLDGELVVLDAQGRSDFSALQRALDGSVTQPLRYIVFDLLGVAGVD
LRGTPLLQRKQLLRELLGDQPGTLAFSDHVIGHGPEVFAASAGTGWEGIVSKLADAPYRE
GRSADWVKTKHADSDEFVVVGYTDPKGARSGFGALLMAQREGKTLRYVGRVGTGFDDALL
GKITALLQALHSDTATLELPTHIPGRPRDVHWVRPVLIAEVAFRGWAKEGLLRQAAFKRL
REDKPMSELGGDRAAPGKPRAAGKSGGATKAIAPARKTATKKTANTTVEASTRTASKRVR
STASKTTAISKTAASGSRAAKSAASRSTASTSTPTDGITITHPERVVFSAVGISKGDVAD
YYRAVAPLVLAEIARRPLSLLRCPDGAGGDCFFQKHEGRHLGAHIKAIALKQKSGTEDYI
YVEDVAGLLELVQMNTLELHPWGAQVDDPEHPDRLVFDLDPGDAVSWSDVVAAARDIRAK
LRSAGLESAVRLSGGKGLHVVVPIVPEAGWEQARDFCEAFAQALATHTPDRYVATMSKAK
RHGVIFVDWLRNGRGNTSVCSWSLRAREKATVAVPLRWEELGKISGPDAFPMDKALQRAK
RQRADPWESVLALKQYLPTGDDKN
NT seq
2775 nt
NT seq
+upstream
nt +downstream
nt
atgtcactgcacgactacaacgccaagcgccgcttcgaccagacaccggaaccggccggc
gagacgcctgcgcgcgccaacacacaaccgatcttcgtcgtgcagctgcaccacgccagc
tcgcgccattacgacttccgtctggaagccgacggcgtgctcaagagttgggctgtgccg
aaggggccatcgttgcgcgttggcgaaaaacgcctggcggtgcaggtggaggatcatccg
ttgtcgtacgccagcttcgaaggcgatatcccgcaagaccattacggcgccgggcatgtg
gatgtcttcgaccacggccattggcagtgcgaaggcgacgcgctagcggcgctggaagcg
ggcaagctggaattcgagttgcagggcacgctgctgcgcggtggctttgcgttggtgcgc
acgcaaatgcgtggtggcaaaccgcaatggctgctgttcaagcgcaccgatgcctacgcg
gccgatctggatgccgatgcgctggtggcgcagcagtcagccggcgcatcgggtgtggca
acttcggcaacgcgtgccaagacagcgtcggtcacaacgcgcggcaaggctagccgtgcg
caacgtgtgccgccagaagcaatcgccgggacatcgacagtgacaagcaaacgtgtgcgt
tcagggcgtgcagaatccaaacagtggcgtacccgcgccctggcgctggacggcgcgcga
gacgcgccatgcccaaccgagctgcgcgcgcaactgaccttgctgcgcgagcaggccccg
gagggcgagcgctggttgcacgagatcaagtgggatggttatcgcctgctggccgatatg
gtcgatggaaacgtgcagttgcgctcacgcaacgaccaggcctggacgcagcgctttccg
gatgtggtgcgcgcgttgcaggcattgccagtgcgcgatgcgaggctggatggcgagctg
gtggtgctggacgcgcaagggcgcagcgatttctcggcgctgcaacgcgcgctcgatggc
agcgtcacgcaaccgctgcgctatatcgtgttcgacctgctcggggtcgccggggtggat
ctgcgcggcaccccgttgctgcaacgcaagcaattgctgcgcgaattgctgggcgatcaa
ccgggcacgctggcatttagcgaccatgtgatcggtcacggcccggaagtgttcgcggcc
agcgccggcaccggctgggaaggcatcgtcagcaagctcgccgacgccccttatcgcgaa
ggacgcagcgccgattgggtcaagaccaagcacgcagacagcgacgagtttgtggtggtg
ggttacaccgatcccaagggcgcacgcagtggttttggcgcattgctgatggcgcagcgc
gagggcaagacgctgcgctatgtcgggcgtgtgggcaccggtttcgacgatgccttgctg
ggcaagatcaccgcgctgttgcaggcgctgcatagcgacaccgccacgctggagttgccc
acgcacatcccggggcggccacgcgatgtgcattgggtgcgaccggtgttgatcgccgag
gtggcctttcgcggttgggccaaggaagggctgctgcggcaagccgcgttcaagcgtttg
cgtgaggacaaacccatgagcgagttgggcggcgatcgtgccgcgccgggcaagccgcgt
gctgctggcaaaagtggcggtgcgacgaaggccattgcgcctgcgcgcaagacggcgaca
aaaaaaacagccaacacgacagtcgaagcatccaccaggaccgccagcaaacgcgtgcgt
tcgacggcatcgaagacgaccgccatatcgaagactgcagcgtccggatccagggcagcc
aaatccgcagcgtccaggtccactgcgtccacatccacgcccacagacggcatcaccatc
actcatcccgagcgcgtagtgttttctgcggtcggtatcagcaagggcgatgtggcggac
tactaccgcgcagtggcgccgctggtgctggcggagatcgcacgccgcccgttgtcgctg
ctgcgctgccccgatggcgccggtggcgattgcttcttccagaagcacgaaggtcgccat
ctgggtgcgcatatcaaggcgattgcgctaaagcaaaaaagcggcaccgaggactacatc
tacgtcgaagatgtcgccggcctgctcgagctggtgcagatgaacaccctcgagctgcat
ccctggggcgcgcaggtagacgacccggaacatccggatcggctggtgttcgacctggac
cctggcgacgctgtgtcctggtccgatgtggtcgccgccgcgcgcgacatccgcgccaag
ctgcgcagtgcagggctggaaagcgcggtgcgcctgtccggcggcaagggcctgcacgtg
gtggtgccgatcgtgccggaggcaggctgggagcaggcgcgcgatttctgcgaggcgttc
gcacaggcactggcaacgcacacgccggatcgctacgtagcgaccatgagcaaggccaag
cgccacggcgtgatcttcgtcgactggctacgcaatgggcgcggcaacaccagcgtgtgt
tcgtggtcgctacgcgcgcgcgaaaaagccaccgttgccgtgccgctgcgctgggaagaa
ctcggcaagatcagcggcccggatgcgtttccgatggacaaggcattgcaacgggccaag
cgtcaacgcgcagacccttgggaatcggtgctggcgttgaagcagtacttgcccacgggc
gacgataagaactaa
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