Xanthomonas hydrangeae: LMG31886_12250
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Entry
LMG31886_12250 CDS
T07925
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
xhd
Xanthomonas hydrangeae
Pathway
xhd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xhd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LMG31886_12250 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xhd03019
]
LMG31886_12250 (recQ)
03400 DNA repair and recombination proteins [BR:
xhd03400
]
LMG31886_12250 (recQ)
Enzymes [BR:
xhd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LMG31886_12250 (recQ)
Messenger RNA biogenesis [BR:
xhd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LMG31886_12250 (recQ)
DNA repair and recombination proteins [BR:
xhd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LMG31886_12250 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
CAD7728905
LinkDB
All DBs
Position
LMG31886:complement(1492803..1494605)
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AA seq
600 aa
AA seq
DB search
MSSPAHELLSRVFGYDDFRGPQQAIVEHVAAGNDALVLMPTGGGKSLCYQVPALLRDGIG
IVVSPLIALMQDQVEALRQLGVRAEFLNSTLDAENAQRVERALLSGDLDLLYVAPERLLT
PRFLSLLERSRIALFAIDEAHCVSQWGHDFRPEYRQLTVLHERWPHIPRMALTATADPPT
QREIAERLDLADVRHFVSSFDRPNIRYTVVQKDNARKQLQEFLGRHRGSAGIVYAMSRRK
VEETAQQLCAQGFNALPYHAGLPAEVRAENQRRFLREDGIIMTATIAFGMGIDKPDVRFV
AHVDLPKSLEGYYQETGRAGRDGDPAEAWLCYGLGDMVMLKQMIEQGEAAEERKRLERAK
LDHLLGYCESMQCRRQVLLAGFGETYPKPCGNCDNCLTPAAAWDATVASQKALSCVYRSG
QRFGVGHLLDILRGSENERIKQLGHDQLSTYGIGRDLDERTWRGVFRQLVAASLLEVDSE
GHGGLRLTDASRQVLKGERQVMMRRENPAAGRERERGTQRTGLPVQPQDLSLFNALRGLR
AELAKEQNVPAFVIFHDSTLRNIAEQRPTSIDALSHIGGIGGGKLARYGAQLIEIVREQG
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcccccgcccacgaactgctcagccgcgtcttcggttacgatgacttccgcggt
cctcaacaggccatcgtcgaacacgttgccgcgggtaacgacgccctggtgctgatgccc
accggtggcggcaaatcgctgtgctaccaggtgccggcgctgttgcgcgatggcatcggc
atcgtggtctcgccgctgatcgcactgatgcaggatcaggtcgaggccttgcgtcagctc
ggcgtgcgtgccgaattcctcaactccacgctggatgcagaaaacgcgcaacgggtcgaa
cgcgccttgctgtccggcgatctggatctgctctacgtcgcgccagaacgcttgctgacg
ccgcgcttcctgtccttgctggagcgcagccgcatcgcgctgttcgccatcgacgaggcg
cattgcgtctcgcaatggggccacgacttccgccccgaataccgccagctcaccgtgctg
cacgagcgctggccgcacatcccgcgcatggctttgaccgccaccgccgatccaccgacc
cagcgcgagatcgcagaacgcctggatctggccgacgtgcgccacttcgtcagctccttc
gaccgccccaacatccgctataccgtggtgcagaaggacaacgcgcgcaagcaattgcag
gaattcctgggccgtcatcgcggctcggccggcattgtctacgccatgtcgcggcgcaag
gtcgaagaaaccgcgcagcagctgtgcgcgcaaggcttcaacgccctgccctaccacgcc
ggtttgccggccgaggtgcgtgcggaaaaccagcgccgcttcctgcgcgaagacggcatc
atcatgaccgccaccatcgccttcggcatgggcatcgacaagccggacgtgcgctttgtc
gcgcatgtggatctgcccaaatcgctggaaggctattaccaggaaaccggccgcgccggc
cgcgacggcgacccggccgaagcctggctctgctatggcctgggcgacatggtgatgctc
aagcagatgatcgaacagggcgaagccgccgaggagcgcaagcgcctggagcgcgccaag
ctcgatcacctgctcggctattgcgaatcgatgcaatgccgccgccaggtgctgctggcc
ggcttcggcgagacctatcccaagccctgcggcaattgcgacaactgcctcaccccggcg
gccgcctgggatgccaccgtggcttcgcaaaaagcgctcagttgcgtgtaccgcagcggg
cagcgcttcggggtgggccatctgctcgacatcctgcgtggcagcgagaacgagcgcatc
aagcagctcggccacgaccagttgagcacctacggcatcggccgcgacctggacgagcgc
acctggcgcggcgtgttccgtcagttggtggccgccagcctgctggaggtcgacagcgaa
ggccatggcggtctgcgcctgaccgacgccagccgccaggtactcaagggcgagcgccag
gtcatgatgcgccgcgagaacccggctgccggacgcgagcgggagcgcggcacgcaacgc
accggcctgccggtgcagccgcaggatctgagcttgttcaacgccttgcgcggcttgcgc
gcagagctggccaaggaacagaacgtgccggcgtttgtgatcttccacgacagcacgctg
cgcaacatcgccgaacaacgccccaccagcatcgatgcgttgtcgcatatcggcggcatc
ggtggcggcaagctggcccgctacggggcgcagctgatcgagatcgtgcgcgaacaaggc
tga
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