Xanthomonas hydrangeae: LMG31886_12270
Help
Entry
LMG31886_12270 CDS
T07925
Name
(GenBank) hypothetical protein
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
xhd
Xanthomonas hydrangeae
Brite
KEGG Orthology (KO) [BR:
xhd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xhd03019
]
LMG31886_12270
Enzymes [BR:
xhd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LMG31886_12270
Messenger RNA biogenesis [BR:
xhd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LMG31886_12270
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
WHD_HA2
AAA_22
AAA_19
nSTAND3
AAA_30
SRP54
ResIII
nSTAND_NTPase5
NACHT
T2SSE
AAA_23
Cas3-like_C_2
TsaE
AAA_25
Motif
Other DBs
NCBI-ProteinID:
CAD7728921
LinkDB
All DBs
Position
LMG31886:1495531..1499652
Genome browser
AA seq
1373 aa
AA seq
DB search
MSAIDTDLATTLRERRSAVDGGMSRDRGRLLGLWSRWQGKPGNVQLRQAFEQALAASQAQ
RKARAEQQHAITLDTQLPIAREAERIIALIRDHQVVVIAGETGSGKTTQLPKLCLAAGRG
AAGMIGCTQPRRIAARAVAARVAEELKTPLGTTVGFQVRFTDRVGEDSRIKFMTDGILLA
EIASDRWLSAYDTIIVDEAHERSLNIDFLLGYLKQLLQKRSDLKLIVTSATIDTERFARH
FDDAPVINVEGRTFPVEVRYRPLEGEAGDDSDGEQGNGRDGERTVNDAIVAAIDEITRID
PRGDVLMFLPGEREIRDAHQSLERRKYRETEVVPLYARLSAQDQDRVFNPGPRRRLVLAT
NVAETSLTVPRIRYVVDPGFARIKRYSPRQKLDRLHIEPISQASANQRMGRCGRIAEGIC
YRLYAEADFAARPAFTDPEIRRASLSGVILRMLQLGLGRIEDFPFLEAPDERAVADGWQQ
LLELGAIDGERRLTATGRQMARLPVDVKLARMLVAAQQHGCLREMIVIASFLGIQDPRER
PPEAREAADNAHALFADARSEFVGILRLWEAYRQVHEELTQSKLRDWCNRHFLGFLRMRE
WRELHRQLRLLCEELGWSEEPAGVMMAPLLAGASAPPREDGHNANRPTRGQLHRAARLAR
EGRPEPSAPPARTTSAAANKQAEAAEVSARTSERERAAAYQALHRALLAGLPTQIGHRTE
KGDFLAARQRRFVPFPGSALARKPPPWILAATLLDTQKVWGMTNATIEPDWAITELPHLL
ARKHFDPHWSRAQGQVVASEQISLFGLVLAPKKPVHFGKIDPAAAHDLFVRQGLVTGEIN
TRAAFVADNLKVLEQAREEEAKLRRAGIVADEEWQARWYLDRIPSELHSASGLDAWWKTL
PPDKRRSLHWSLNDLLPGEGSEADRFPKYFPLGDARLPLHYRFEPGAIDDGVTLDVPLHL
LNALDPTRLSWLAPGFVADKASALIRSLPKAQRRNYVPAPDFGRAFYEAYSIASADDIRG
ELARFLSKATGTQVAALDFDEEALDTHLLMNLRLRDDDGKVLAESRDLDGLRARFGERAG
QAFAARAGRALAAEGLRDFPATPIPEQVSGEAGVPAYPALVDQGEDAALRIFADRNEAAQ
AHPRGVRRLLEIVLADKIRQARKQLPVSPKTGLLYAAIESQERLRGDLVDAALNAVLADG
LGAIRDAGAFAQRRDDATKRLFGEAMERLTLAESILGAVAELKPLLEAPLMGWARGNLDD
MEQQLRALVHAGFLRETPAEALANYPRYLKAMILRTERAKRDPARDQTRMLELKPFVDAL
GDAAARGLQQRPEWESLRWDLEELRVSVFAQELGAKSGVSAKKLSQRVAALRG
NT seq
4122 nt
NT seq
+upstream
nt +downstream
nt
atgagcgctatcgataccgacctggccaccaccttgcgcgagcgccgtagcgccgtcgat
ggcggcatgagccgcgaccggggccgcttgctaggcctgtggtcgcgctggcaaggcaaa
cccggcaacgtgcagctgcgtcaggccttcgagcaggcgctggcggcgtcgcaggcgcag
cgcaaggcgcgcgccgagcagcagcacgccatcacgctggacacgcaactgccgatcgcg
cgcgaggccgagcgcatcatcgcgttgatccgcgatcatcaagtggtggtcattgccggc
gaaaccggctcgggcaagaccacccagctgcccaagctgtgtctggcggccgggcgcggg
gcggccggcatgatcggctgcacccagccgcgccggatcgccgcacgtgcggtggctgca
cgcgtggccgaggagttgaagacgccgttgggcaccacggtgggcttccaggtgcgcttc
accgaccgggttggcgaagattcgcggatcaagttcatgaccgacggcatcctgctggcg
gagatcgccagcgaccgttggttgtcggcctacgacaccatcatcgtggacgaggcgcac
gagcgcagcctcaacatcgacttcctgctcggctatctcaagcagctgctgcaaaagcgc
tccgacctcaagctgatcgtgacttcggccaccatcgataccgagcgcttcgcgcggcat
ttcgacgatgcgccggtgatcaatgtggaaggccgcacttttccggtggaggtgcgttac
cgccccctcgaaggcgaggccggcgatgacagcgacggcgagcaaggcaacggccgcgat
ggcgagcgcaccgtcaacgatgcgatcgtggcggcgatcgatgagatcacccgcatcgac
ccgcgtggcgatgtgctgatgttcctgccgggggagcgcgagatccgcgatgcgcatcag
tcgctggagcggcgcaagtaccgcgagaccgaagtggtgccgttgtacgcgcggctgtct
gcgcaggatcaggaccgggtgttcaatccgggcccgcgtcgacgcctggtgctggcgacc
aatgtggccgagacctcgctgacggtgccgcgcatccgctatgtggtggaccccggtttt
gcgcgcatcaagcgctatagcccgcgtcagaagctggaccggctgcatatcgagccgatt
tcgcaggccagcgccaaccagcgcatgggccggtgcgggcgcatcgccgagggcatctgc
taccgcttgtatgccgaagccgactttgccgcccggccggcgttcaccgacccggagatc
cggcgcgcgtcgttgtcgggcgtgatcctgcgcatgctgcaactgggcctggggcggatc
gaggattttccgtttctggaagcgccggacgagcgtgcagtggccgacggctggcagcaa
ctgctggagctgggcgcaatcgatggcgagcgccgcctgaccgccaccggccgccagatg
gcgcgcctgccggtggacgtcaaactggcgcgcatgctggtggccgcgcagcagcacggc
tgcctgcgcgagatgatcgtcattgcctccttcctgggcatccaggatccgcgcgagcgc
ccgcccgaagcgcgcgaggccgccgacaacgcacatgcgctgtttgccgatgcgcgctcg
gaattcgtcggcatcctgcgcttgtgggaggcgtaccggcaggtgcatgaagagcttacc
cagtccaaattgcgcgattggtgcaatcgacattttctgggttttttgcgcatgcgcgag
tggcgcgaactgcatcggcagttacgcctgttgtgcgaagaactcggttggagcgaagag
ccggccggggtgatgatggcgccgctgctggccggtgccagcgcaccgccgcgcgaggat
ggccacaatgccaaccggcccacgcgcgggcagttgcatcgcgccgcgcgtctggcgcgc
gaaggcaggccggagccaagtgcgccacctgcacgcaccacctctgcagctgcgaacaag
caggccgaggccgctgaagtatcggcacgcaccagcgagcgcgaacgcgctgcggcgtat
caggccttgcatcgcgcactgttggccggcctgccgacgcagatcggccatcgcaccgaa
aaaggcgattttctcgccgcgcggcaacgccggttcgtgccgttccccggctcggcgttg
gcgcgcaaaccgccgccgtggattctggccgccacactgctggacacgcaaaaagtgtgg
ggcatgaccaatgccacgatcgagccggattgggcgattaccgagttgccgcatctattg
gcgcgcaagcatttcgacccacattggtcgcgtgcgcaggggcaggtggtcgcctccgag
cagatcagcctgttcgggctggtactggcgccgaaaaagccggtgcatttcggcaagatc
gacccggccgcggcgcacgacctgttcgtgcgtcagggcctggtaacgggcgaaatcaat
acgcgtgcggcgttcgtggcagacaacctcaaggtgctggagcaggcgcgcgaagaagaa
gccaagttgcgtcgcgccggcatcgtggccgacgaagagtggcaggcacgttggtatctg
gatcgcattccgtcggaactgcattcggccagcggcctggatgcgtggtggaaaaccttg
ccgccggacaaacgccgcagcctgcattggtcgttgaacgatctgctgccgggcgaaggc
agcgaggccgaccggtttccgaagtatttcccgctgggcgatgcgcggctgccgttgcat
taccgcttcgagccgggggccatcgatgacggcgtcaccctggatgtgccgttgcatctg
ctcaatgcgctggatccgacgcggctgtcgtggctggcgccgggttttgttgcggacaag
gcatcggcattgattcgcagcctgcccaaggcgcagcgccgcaactatgtgccggcgccg
gatttcgggcgcgcgttctacgaggcctacagcattgcctcggccgacgatatccgtggc
gagctggcgcgctttctgagcaaggccaccggcacgcaggtggcggcgctggatttcgac
gaagaggcgctggacacgcatctgctgatgaacctgcgcctgcgcgatgacgacggcaag
gtgctggccgagtcgcgcgatctggacgggttgcgcgcacgctttggcgagcgtgcgggg
caggcgtttgccgcacgtgcgggccgcgccctggctgccgagggcttgcgcgatttcccg
gccaccccgatccccgaacaggtgtcgggcgaggccggtgtgccggcgtatccggcgttg
gtggatcagggcgaagacgcagcgctgcgtatctttgccgaccgcaacgaagcggcccag
gcgcatccgcgcggcgtgcgccggctgctggaaatcgtgcttgccgacaagatcaggcag
gcgcgcaagcagctgccggtgtcgcccaaaaccgggttgttgtacgcggcgatcgagtcg
caggagcggctgcgcggcgatcttgtcgatgccgcgctcaatgcggtgttggcggacggt
ttgggcgcgattcgcgacgcgggtgcatttgcgcaacgccgcgacgatgcgaccaagcgc
ctgttcggcgaggcgatggagcggttgacactggccgaaagcattctcggtgccgtggcc
gaactcaagcccttgctggaagcgccgttgatgggctgggcgcgcggcaatctggatgat
atggagcagcagttgcgcgcgttggtgcatgccggcttcctgcgcgagaccccggccgag
gcgctggccaactatccgcgttatctcaaggcgatgatcctgcgcaccgagcgggccaag
cgcgatccggctcgcgaccagacccgcatgctcgaactcaaaccgttcgtggatgcgctg
ggcgatgcggccgcacgtggcttgcagcagcgcccggagtgggagtcgctgcgctgggat
ctggaagagttgcgggtctcggtgttcgcgcaggagctgggtgccaagtcgggcgtgtct
gcgaaaaagttgtcgcagcgggtggctgcgttgcgcggttga
DBGET
integrated database retrieval system
