Xanthomonas hydrangeae: LMG31886_16630
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Entry
LMG31886_16630 CDS
T07925
Symbol
pnp
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
xhd
Xanthomonas hydrangeae
Pathway
xhd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xhd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LMG31886_16630 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xhd03019
]
LMG31886_16630 (pnp)
03016 Transfer RNA biogenesis [BR:
xhd03016
]
LMG31886_16630 (pnp)
Enzymes [BR:
xhd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
LMG31886_16630 (pnp)
Messenger RNA biogenesis [BR:
xhd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LMG31886_16630 (pnp)
Transfer RNA biogenesis [BR:
xhd03016
]
Prokaryotic type
tRNA degradation factors
LMG31886_16630 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
KH_2
OB_RRP5_4th
KH-I_KHDC4-BBP
DUF7680
KH_KhpA-B
S1_2
KH_5
Motif
Other DBs
NCBI-ProteinID:
CAD7732072
LinkDB
All DBs
Position
LMG31886:2000046..2002160
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AA seq
704 aa
AA seq
DB search
MAKITKTFQYGKHTVTLETGEVARQASGAVIVKFDDTVLLVTAVAAKTAREGQDFFPLTV
DYQEKFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMN
PDIDGDIAALIGASAALSLAGTPFNGPIGAAKVGYKNGEYILNPTISELKDSQLELVVAG
TANAVLMVESEAALLSEEVMLGAVTFGHRELQKVINVINELTVEAGTKPSTWVAPAKNTA
LINALKEAVGAQLSGAFQVRDKLQRRDAISAIKKDVLESLSGRVASEGWSNAELSKEFGE
LEYHTMRDSVLETKVRIDGRALDTVRPISVQAGILPRTHGSALFTRGETQAIVVTTLGTA
RDGQVIDAVSGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPSLE
EFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEDDRFVVLS
DILGDEDHLGDMDFKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLYILGEMSK
ALTTPRLELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIIIAS
VNAIAAQAAKSRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERV
EKVGDKLKEGDMVRVKVLEVDKQGRIRLSIKAVEEGEGLPASAE
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
gtggcaaaaatcaccaaaaccttccagtacggcaagcacaccgtcaccctggagacgggc
gaagtcgctcgccaggcaagcggcgccgtcatcgtcaagttcgacgacaccgtactgctg
gtcaccgccgtcgccgcaaagaccgcgcgcgaagggcaggacttcttccccctgacggtt
gattaccaggagaagttctatgccggcggccgcatcccgggcggcttcttcaagcgcgaa
ggacgtgcgaccgagaaggaaacgctgatctcgcgcctgatcgaccgtccgatccgtccg
ctgttcccggaggactacaagaacgaagtacagatcatcgccacggtgatgtcgatgaac
ccggacatcgacggcgatattgccgcgctgatcggcgcatcggccgcactgtcgctggcc
ggtacccccttcaacggcccgatcggcgccgccaaggtgggctacaagaacggtgagtac
atcctcaacccgaccatctccgagctgaaggattcgcagctggagctggtggttgccggt
accgccaatgcggtgctgatggtggagtcggaagcggcgctgctgtccgaagaagtgatg
ctgggcgcggtcaccttcggccatcgcgaactgcagaaggtcatcaacgtcatcaacgag
ctgaccgtcgaagctggcaccaagcccagcacctgggttgcgcctgccaagaacaccgcg
ttgatcaatgcactgaaggaagcggtcggcgcgcagctgtccggtgccttccaggtgcgc
gacaagctgcagcgtcgcgacgcgatctccgcgatcaagaaggacgtgctcgagtcgctg
tccggccgggttgcttcggaaggttggagcaacgccgagctgtcgaaggaattcggcgag
ctggaataccacaccatgcgcgactcggtcctggagaccaaggtgcgtatcgacggccgt
gcactggataccgtgcgtccgatctcggtgcaggccggcatcctgccgcgtacccatggc
tcggcgctgttcacccgcggcgagacccaggcgatcgtggtcaccacgctgggcaccgcc
cgcgacggccaggtgatcgacgcggtcagcggcgagtacaaggaaaacttcctgttccat
tacaacttccctccgtactcggtgggcgagtgtggtcgtttcggtgcgccgaagcgtcgc
gagatcggtcacggccgtctggccaagcgcggcgtgctcgcggtgatgccgagccttgaa
gaattcccgtacaccatccgcgttgtctcggaaatcaccgagtccaacggctcttcgtcg
atggcttcggtgtgcggcagctcgctggcgctgatggacgccggcgtgccggtcaaggca
ccggtggcgggcatcgccatgggcctggtgaaggaagacgaccgcttcgtggtgctgtcc
gacatcctgggtgacgaagatcacctgggtgacatggacttcaaggtggccggtaccgca
gaaggcgtgtccgcgctgcagatggacatcaagatcgaaggcatcaccgaagagatcatg
aagcaggcattgcagcaggccaaggctggccgtctgtacatcctgggcgagatgtccaag
gcgctgaccaccccgcgtctggagctgagcgactacgcgccgcgtctgctgaccatcaag
atccacccagacaagatccgcgaagtgatcggcaagggtggctcgaccatccaggcgatc
accaaggaaacgggtacgcagatcgacatccaggacgatggcacgatcatcatcgcctcg
gtcaatgcgattgccgcgcaagctgcgaagtcgcgcatcgagcagatcacctcggacgtg
gagccgggccgcatctacgaaggcaaggtcgccaagatcatggacttcggtgcgttcgtc
accatcctgccgggcaaggacggcctggtgcacgtctcgcagatttccagcgagcgcgtg
gagaaggtcggcgacaagctgaaggaaggcgatatggtccgcgtcaaggtgctggaagtg
gacaagcagggccgcatccgtctgtcgatcaaggcagtggaagaaggcgagggcttgccg
gcttcggccgagtaa
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