Xanthomonas hydrangeae: LMG31886_25240
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Entry
LMG31886_25240 CDS
T07925
Symbol
pcnB
Name
(GenBank) Poly(A) polymerase I
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
xhd
Xanthomonas hydrangeae
Pathway
xhd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xhd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LMG31886_25240 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xhd03019
]
LMG31886_25240 (pcnB)
Enzymes [BR:
xhd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
LMG31886_25240 (pcnB)
Messenger RNA biogenesis [BR:
xhd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LMG31886_25240 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol
PolyA_pol_arg_C
PolyA_pol_RNAbd
Motif
Other DBs
NCBI-ProteinID:
CAD7737043
LinkDB
All DBs
Position
LMG31886:complement(3026752..3028164)
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AA seq
470 aa
AA seq
DB search
MSRPVQRASIVWQQPLGNPATRNGNAIIEPSVTSPFTLRVIPRDQHTISRKDISPNALRV
LYRLRESGFGAYLVGGAVRDLLVGGHPKDFDVATSATPEEVKALFRNCRLIGRRFRLAHV
VFGREIIEVATFRANVDDGSGDRELDNGRLVRDNVYGSIEDDAIRRDFTCNALYYAIEDF
SVRDYCGGFEDVQARLMKLIGDPELRYQEDPVRMLRAVRLAAKLNFDIEAGTAEPIPRLA
GLLSEAAPARLFEEILKLFLSGHGVASFEGLERYGLLGALFPESAAALKSNRSGALRAMV
LEGLRNTDARVANDEPVSPAFLFALLLWPAFCRTLMGLQAQGVQPEDAQRRAADRVTLHQ
LERVALPRRFSLPMQEIWLLQTRFSSRQRKRVFRTLSHPRFRAAFDFLVLRQFASPDHAA
DVEFWREAQKSSGQELVDAIETAQADQEGEEGAPRKRRRRRRRTGAPAGE
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
ttgtcgcgtcctgtgcagcgggctagtatagtgtggcaacagccgttgggcaatcctgca
acacgaaacggaaacgccatcatcgaaccctcagttacatctccgttcacgctgcgcgtc
attccacgcgaccagcacaccatctcgcgcaaggacatcagcccaaacgcgctgcgcgtg
ctgtaccgcttgcgcgaatcgggctttggcgcctacctggtcggcggcgcggtccgtgac
cttttggttggcggtcatcccaaggatttcgacgtggccaccagcgccacgccggaagaa
gtcaaggcgctgttccgcaactgtcgtctgatcggccgccgcttccgcctggcgcatgtc
gtgttcggccgcgagatcatcgaagtggccacgttccgcgccaatgtcgacgacggcagc
ggcgatcgcgaactggataacggccggctggtgcgcgacaacgtctacggcagcatcgaa
gacgacgcgatccgccgcgacttcacctgcaatgccctgtactacgcgatcgaggatttc
tcggtgcgcgactactgcggcggcttcgaagatgtgcaggcacggctgatgaagttgatc
ggcgacccggagctgcgttaccaggaagacccggtgcgcatgctgcgcgcggtgcgtctg
gcagccaagttgaacttcgacatcgaagccggcaccgcagaacccatcccgcgcctggcc
gggctgttgtccgaagccgcgccggcgcggttgttcgaagaaattctcaagctgttcctg
tccgggcacggcgtggccagtttcgaaggcctggagcgttacggcctgctcggcgcgctg
tttcccgaaagtgccgcagccctgaaatccaaccgcagcggcgcgttgcgcgcgatggtg
ctggaaggcctgcgcaacaccgatgcgcgcgtggccaacgacgagccggtgtcgcccgca
ttcctgttcgccctgctgctgtggccggcgttctgccgcaccttgatgggcctgcaggcg
cagggcgtgcagccggaagacgcgcagcgtcgtgcggccgaccgggttaccttgcatcag
ctcgagcgggtggcattgccgcgccgtttctcgctgccgatgcaggaaatctggctgctg
caaacgcgcttttcctcgcgtcagcgcaagcgcgtgttccgcaccttgtcgcatccgcgt
tttcgcgccgcgttcgattttctggtgctgcgccagtttgcttcgcccgatcacgccgcc
gatgtggagttctggcgcgaggcgcagaagtcctccggccaggagctggtcgatgcgatc
gaaaccgcgcaggccgatcaagagggcgaagagggcgcgccacgcaagcgccgtcgtcgc
cgtcgtcgcaccggcgcccctgcaggcgagtag
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