Xanthomonas hydrangeae: LMG31886_25860
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Entry
LMG31886_25860 CDS
T07925
Symbol
truD
Name
(GenBank) tRNA pseudouridine synthase D
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
xhd
Xanthomonas hydrangeae
Brite
KEGG Orthology (KO) [BR:
xhd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
xhd03016
]
LMG31886_25860 (truD)
Enzymes [BR:
xhd01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
LMG31886_25860 (truD)
Transfer RNA biogenesis [BR:
xhd03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
LMG31886_25860 (truD)
Prokaryotic type
LMG31886_25860 (truD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
Motif
Other DBs
NCBI-ProteinID:
CAD7737396
LinkDB
All DBs
Position
LMG31886:complement(3097236..3098357)
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AA seq
373 aa
AA seq
DB search
MSDTSLLPRAHGAAVLGAAMRSTPEDFQVDELPAFEASGEGEHLLLSVRKRGQNTAYIAK
KLASWAGIAEMGVSYAGLKDRHAVTTQRFSVHLPKRIAPDIATLDDDEMQVVDSTWHNRK
LQRGALHGNRFVLTLRQVQGERAAIEQRLQAIAARGIPNWFGEQRFGRDGGNVASALAMF
GYMQDAEGALVPAPTRRLRNDQRSILLSAARSALFNRVLTARVEQGSWDAALEGEAWMLD
GSRSVFGPEPWSDVLAERLARFDIHPSGPLWGVGELRSTDQAAAVERGALSDPQSEALRI
GLEAAGLKQERRALRLRPQGLDYRWLDAEILQVEFALPPGCYATAVLWELGEVIDAGRFN
ASVRSADERAAGE
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacacctctctcctgccgcgcgcgcatggcgctgcggtccttggcgcagcaatg
cgcagcacgcccgaagattttcaggtcgatgagctgccggccttcgaagcttccggcgaa
ggcgagcacctgttgctcagcgtgcgcaaacgtggccagaacacggcatatatcgccaag
aaacttgcatcgtgggcgggcattgcggaaatgggcgtcagctacgccggcttgaaggat
cgccatgcggtgaccacgcagcgtttcagcgtgcatctgcccaaacgcatcgcaccggac
atcgccacgctcgacgacgacgaaatgcaggtggtcgacagcacctggcacaaccgcaaa
ctgcaacgcggcgcgctgcacggcaatcgcttcgtgttgacgctgcgccaggtacagggc
gaacgcgccgcgatcgagcaacgcttgcaggcgatcgccgcacgcggcattcccaactgg
ttcggcgaacaacgctttggtcgcgatggcggcaacgtggcatcggcgttggcgatgttc
ggctacatgcaggatgccgagggggctttggtgccggcaccgacgcggcgtctgcgcaac
gatcaacgttcgatcctgttgtcggcggcgcgctcggcactgttcaatcgcgtgctcact
gcacgcgttgagcagggcagttgggacgccgcgctggagggcgaggcctggatgctggat
ggctcacgcagcgtgttcggccccgagccgtggagcgatgtgctggccgagcgtctggcg
cgtttcgatatccatcccagtggcccgttgtggggcgtgggcgaactgcgttcgaccgat
caggctgccgcagtggagcggggcgcgttgtccgatccgcaatccgaggcgctgcggatc
ggtctggaagccgctggtctgaagcaggagcgccgcgccttgcgcctgcgcccgcaaggc
ttggactaccgctggctggatgcggaaatcttgcaggtcgagttcgcattgccaccaggc
tgttacgccaccgcggtgctatgggagctgggcgaggtgatcgatgccggtcgcttcaac
gccagcgtgcgttctgccgacgagcgtgctgctggcgagtga
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