Xanthomonas hydrangeae: LMG31886_26570
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Entry
LMG31886_26570 CDS
T07925
Symbol
rpoD_1
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
xhd
Xanthomonas hydrangeae
Pathway
xhd02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
xhd00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LMG31886_26570 (rpoD_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xhd03021
]
LMG31886_26570 (rpoD_1)
Transcription machinery [BR:
xhd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LMG31886_26570 (rpoD_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Ank_2
Sigma70_r3
Ank_5
Sigma70_r1_2
Ank
Ank_3
Ank_4
Motif
Other DBs
NCBI-ProteinID:
CAD7737809
LinkDB
All DBs
Position
LMG31886:3180662..3183007
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AA seq
781 aa
AA seq
DB search
MSRFLKIAVVAGVESAVQIHVDRGDNLNARDEKGQTPLMLSAARNRAAICRLLLASGADA
GLLDPTGRDALAIAKAAGAVEAASAIEAACLRPTDDSVCLSAPDKTKQPGNDPSSTEPVD
TELNNTPVSGETTAPEASVTLLSVTADDDPEFDLSGWEAEEEQEPPPDDSTVAMVAIGIQ
TAINEHQPLDTSADWGDLDAFLPDRATPLRRKEDADARELLRLTLLRALREGSVPQLAVE
DLTQGDDREPDAEAYSLLSMVINDLGAETDERFEYSTPYESFEVYIDPEESLGEEDKVAE
ALAFVDDLAARRNEPLRLYQRELQRGTLITAEAEVALSQAMERGIEKALDALAAWPWGVS
ATLDAARQVSSGARPLRWISSGPQAELQEAEPVLDSEMEAAVGLEQTLTEDEAVSSEEES
FPQFGSEIKESADDFAEFCTNSELLSGLSIGTRQNGPEWEKCRSILASLGLSRGFLMELA
TCRIVGEPETALLFVQAMQTYRNARDQMTVANLKLVYSIAPKYLFSGLQLDDLVQEGNLG
LMKAVDKYDWRRGFKFSTYATWWIRQGITRNVADKSRTIRIPVHIYEKTRRIAQTVRTLE
RRYGRPPTSEEISAAAELRVQEVEALSRIAPEPLPLHEMTDIDDIIAIHAKDQLLAPDPV
EVVEDYQFARSVDTFLSTLKAREQSVMRMRFGIGVGARESMTLEEVGRKFDVTRERIRQI
EAKGLRQLRHPTRLDKLLIELGLTWAPKPEASSTKTAKGAVSKSKETTAQTHGETDGPMN
P
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgatttcttaagatcgcagtggtggctggcgtggagagcgccgttcagatccac
gttgatcgtggggacaatctcaacgcacgcgacgagaagggccagacccccctcatgctc
tcagccgcgcggaatagggctgccatctgcaggttgctcttggcctcaggtgcggatgcc
ggcttgcttgatcctacggggcgggatgctcttgccatcgccaaggcggccggagcggtg
gaagccgcatctgctatcgaggcggcttgtctgcgccccaccgatgatagcgtttgctta
tcagcacctgacaaaaccaagcagccaggaaacgatccttcaagcacggagcctgttgac
accgagctcaacaatactcctgtctcaggcgaaactacagcgccagaagctagtgtgacg
ctgctttcagtgaccgctgacgatgatcctgagttcgacttgagcggatgggaagccgaa
gaggagcaagagcctcctccagacgactcaaccgtcgccatggtagcgatcggcattcaa
acagcgatcaatgagcatcagccccttgatacgtccgcagactggggtgacctggatgca
ttcctgcccgaccgcgccacacctttacgtcgcaaagaagacgctgacgcacgcgagctg
ctgagactgactctgctccgcgcacttcgcgaaggtagcgttccacaattggccgttgag
gatttgacgcaaggtgatgatcgcgaacccgatgccgaagcctactcgctgctgagcatg
gtcattaacgaccttggcgcggaaaccgacgagcgattcgaatattcaacaccttacgaa
agctttgaggtctacatagatcccgaagaaagtcttggcgaggaggataaagttgcagag
gcattggcattcgttgacgacctcgcagcccggcgcaatgagcctttgcggctctatcag
cgagaactccagcggggaacactgatcactgcggaagcggaagtcgccttgagtcaagca
atggagcgcggtatagaaaaagcgctcgacgctctggctgcctggccttggggagtcagc
gccacgctggatgcggcccgccaagtttccagtggagccaggcccctacgctggatctct
tctggtccgcaagccgaactccaggaggcagagcctgtgctcgattccgaaatggaggcg
gccgtcgggttggagcagaccttgacagaagacgaagccgtgagttcagaagaggagtcg
tttccgcagttcggttcggagattaaagagtccgccgatgacttcgcggagttttgcacc
aactcggaactcttgtcgggcctgagcatcggcacgagacagaacgggcccgaatgggaa
aagtgccgaagcatcctcgcttcgctaggtctaagccgtggtttcctcatggaacttgcc
acttgcaggatcgttggagaacctgaaaccgcacttttgtttgtccaagcaatgcagact
taccggaacgcgcgcgaccaaatgactgtcgctaacttgaagcttgtttactccatcgcc
cccaaatacctcttcagcggactgcaactcgacgacttagtgcaggaaggaaaccttggc
ctcatgaaggccgtggacaaatacgattggcggagggggtttaagttctcgacgtatgca
acatggtggattcgtcaagggatcacccgcaatgtggccgataagagcagaaccatccgc
attcccgtccacatctacgagaagacccggcgcattgcacagacagtccgcactctcgag
cgtcgttacggccgccccccgacctcagaagaaatatcggcagccgcggagctccgcgtc
caagaggtcgaagcactatcccgcatcgcaccggagccactgcctcttcatgagatgaca
gacattgacgacatcatcgccattcatgcaaaagatcagttacttgcccccgaccccgta
gaagtggtcgaggattatcagttcgcccggtctgttgacaccttcttgagcacgcttaaa
gccagagagcagagcgtaatgcgcatgcgcttcggcatcggcgttggcgcccgagaatcc
atgacacttgaagaggtcggcaggaagttcgacgtgacgcgcgagcgcatcaggcagatt
gaggccaagggtcttcggcaactgcggcaccccacacggctggacaagctactgatcgag
ctcggccttacttgggctccaaaacccgaagcttcctcaaccaagacggccaagggcgcc
gtatccaaatccaaggagacaacagcccagacgcatggggagacggacggacccatgaac
ccgtga
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