Xanthomonas hydrangeae: LMG31886_29060
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Entry
LMG31886_29060 CDS
T07925
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
xhd
Xanthomonas hydrangeae
Pathway
xhd03030
DNA replication
xhd03430
Mismatch repair
xhd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xhd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LMG31886_29060 (dnaE)
03430 Mismatch repair
LMG31886_29060 (dnaE)
03440 Homologous recombination
LMG31886_29060 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xhd03032
]
LMG31886_29060 (dnaE)
03400 DNA repair and recombination proteins [BR:
xhd03400
]
LMG31886_29060 (dnaE)
Enzymes [BR:
xhd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LMG31886_29060 (dnaE)
DNA replication proteins [BR:
xhd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LMG31886_29060 (dnaE)
DNA repair and recombination proteins [BR:
xhd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LMG31886_29060 (dnaE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
CAD7739278
LinkDB
All DBs
Position
LMG31886:3468771..3472361
Genome browser
AA seq
1196 aa
AA seq
DB search
MSTSRFVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDMPALAVTDLNN
LFALVKFYKAAEGVGIKPIAGADVMIATPDMTPWRMTLLCRDREGYLSLSRLLTRAWMEG
HRPEGGVAIHPEWLQSGHANLFALAGRDSLAGRLFSEGRADLAEQQLADWQRVFGDGLHL
ELTRTGREGEERFNQFALHAAGVRGLPVVASNDVRFLYASDFNAHEARVCISSGRVLDDP
KRPREYSDQQYLKSADEMAALFADVPDAIDNTHALAQRCNIEMRLGTYFLPAYPVPEDET
LDSWIRSQARDGLAARLEKSPIAPGKTRQDYVDRLEFELDTIIKMGFPGYFLIVADFIQW
GKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLNPERVSMPDFDIDFCMDR
RDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFTYGLVDSVAKLIPNILGIT
LKDAMGEGKDSEMASPDLIQRYQVEDDVRDLMDLARQLEDLTRNAGKHAGGVVIAPEPLS
EFCPLFAEHDADGRGKNQVTQFDKDDVEAVGLVKFDFLGLRTLTIIDWAVKAINVRHARA
GIDPVDITTLPLDDVPTYKGVFASGNTGAVFQFESSGMRRLLKDARPDRFEDLIALVSLY
RPGPMDLIPDFNARKHGQQEIIYPDPRTEAILKDTYGIMVYQEQVMQMAQIVGDYSLGGA
DLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAAKADEIFDLMEKFAGYGFNKSHAAAYA
LVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNLGLTVRPPRVNESAYMFEA
ATPDTIQYGLGAIKGVGQGACEAIIEERQRGGPYTTLLDFCTRVGTAKLNRRTLEAMVNA
GAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGPDPSAPALRLDLPESKEWP
LGQLLTGERETLGFYLSGHPFDPHRDEVRELVGCDLGALEKILASQQRGGGGGGGDSEKR
AWRPEVSAILAGLVVGVRRKGDSQVFVQLEDGRGRVECSAFSDAMAEFGHLLTRDRILIV
KGGLREDEFNGGYSLRIRQCWDYEQICADHAQRLSLRLDLREKQAWKRIDALLAKHRPGK
TPLRLDLLLRAQSGGVAGMLDLNGSHSVRIDQQLMDSLRADPAVRTLKIKYSPPWA
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
atgtccacttcccgcttcgtccatctgcacgtccacaccgagttctcgctggcggattcc
accatccgcgtgcccgagaaaccggatcaggctgacccgaaaaaagccaagcaggccaac
ctgctgagccgcgcggtcgagctcgacatgccggcgctggcagtcaccgacctcaacaac
ctgttcgcgctggtcaagttctacaaggccgccgaaggcgtcggcatcaagccgatcgcc
ggcgccgacgtgatgatcgccaccccggacatgacgccctggcgcatgaccctgctgtgc
cgcgaccgcgaaggctacctgagcctgtctcggctgctcacccgcgcctggatggaaggc
caccgccccgaaggcggcgtggccatccaccccgaatggctgcagagcggccacgccaac
ctgttcgccctggccggccgcgacagcctggccggccgtctgttttcagagggccgcgcc
gacctggccgagcagcaactggccgactggcaacgcgtgttcggcgatggcctgcatctg
gagctcacccgcacagggcgcgagggcgaagaacgcttcaaccagttcgccctgcatgcg
gccggcgtgcgtggcctgccggtggtggccagcaacgacgtgcgctttctgtacgccagc
gacttcaatgcgcacgaagcgcgtgtgtgcatttcgtccggccgcgtgctcgacgacccc
aagcgcccgcgcgagtacagcgaccagcagtacctgaagtctgcagacgagatggccgcg
ctgttcgccgacgtgcccgacgcgatcgacaacacccacgcgctggcgcaacgctgcaat
atcgagatgcgcctgggcacctacttcctgcccgcctatccggtgccggaagacgaaacg
ctggacagctggatccgcagccaggcgcgcgacggtctggccgcacgcctggaaaaaagc
ccgatcgcccccggcaagacccgccaggattacgtggaccggctggaattcgagctggac
accatcatcaagatgggcttccccggctacttcctgatcgtggccgacttcatccagtgg
ggcaagaaccagggcattccgatcggcccgggccgcggttccggtgccggctcgctggtg
gcctgggccctgcagatcaccgatctggatccgctgccgtacaacctgctgttcgagcga
ttcttgaatccagagcgcgtgtcgatgcccgacttcgacatcgacttctgcatggatcgc
cgcgacgaggtgatcgactacgtggcgcgcaagtacgggcgcgagcgggtcagccagatc
atcacctacggcaccatggcggccaaggcggtggtgcgcgacgccgggcgcgtgctcggt
ttcacctatggcctggtcgacagcgtggccaagctgatccccaacatcctgggcatcacg
ctcaaggatgcgatgggcgaaggcaaggattcggagatggcctcgccggatctgatccag
cgctaccaggtcgaagacgacgtgcgcgacctgatggacctggcgcgccagctcgaggac
ctcacccgcaacgccggcaagcacgccggcggcgtggtgatcgcgcccgagccgctgtcc
gaattctgcccgctgtttgccgaacacgacgccgacggacgcggcaagaatcaggtcacc
cagttcgacaaggacgacgtcgaagcggtcggcctggtcaagttcgacttcctcggcctg
cgcacgctgaccatcatcgattgggcggtcaaggcgatcaacgtgcgccacgcgcgtgcc
ggcatcgacccggtcgacatcaccaccctgccgctcgacgacgtgcccacctacaagggc
gtgttcgcctcgggcaataccggtgcggtgttccagttcgaatcctcgggcatgcgccgc
ctgctcaaggacgcgcgcccggaccgtttcgaagacctgatcgcgctggtgtcgctgtac
cgccccggcccgatggacctgatcccggacttcaacgcgcgcaaacacggccagcaggag
atcatctatccggatccgcgtaccgaggccatcctcaaggacacctacgggatcatggtg
taccaggagcaggtcatgcagatggcgcagatcgtcggcgattattcgctgggcggcgcc
gacctgctgcgccgcgcgatgggcaagaaagtgccggccgaaatggccaagcaccgcgag
atcttccgcgaaggtgcggccaagggcggcgtgagtgcggctaaggccgacgaaatcttc
gacctgatggagaagtttgccggctacggcttcaacaagtcgcacgccgccgcgtacgcg
ctggtcagctaccagaccgcctggctgaaacggcattacccggccgaattcatggccgcc
acgctgtcttcggacatggacaacaccgacaaggtggtcggctttctcgatgaagtgcgc
aacctcggcctgaccgtcaggccgccgcgcgtcaacgaatcggcctacatgttcgaggcc
gccaccccggacacgattcagtacggcctgggcgcgatcaagggcgtcggccagggcgcg
tgcgaggcgatcatcgaagaacgccagcgcggcggcccttacaccacgctgctggatttc
tgcacgcgtgtgggcaccgcaaagctcaaccggcgcacgctggaggcgatggtcaatgcc
ggcgcgatggacggcctgggcaagaaccgcgcctcgctgatgctgcagctgccggaggtg
atgaaagccaccgagcagatggcgcgcgaacgcgcctcgggacagaactcgctgttcggc
gggccggacccgagtgcaccggcactgcgtctggacctgcccgaaagcaaggaatggccg
ctgggccaactgctcaccggcgagcgcgaaacgctgggcttctacctcagcggccacccg
ttcgacccgcaccgcgacgaagtgcgcgaactggtcggctgcgatctgggggcgctggaa
aagattctcgcctcgcaacagcgtggcggcggcgggggcggcggcgatagcgaaaaacgt
gcctggcgcccggaagtcagtgccattctcgctggcctggtggtcggcgtgcgtcgcaag
ggcgacagccaggtattcgtgcaactcgaagacggccgtggccgggtcgaatgcagtgcg
ttctccgatgcgatggccgagttcgggcatctgctcacccgcgaccgcatcctgatcgtc
aagggcggcctgcgcgaggacgaattcaacggcggctacagcctgcgcatccgccaatgc
tgggactacgagcagatctgcgccgaccacgcgcaacgcctgtcgctgcgcctggacctg
cgcgaaaaacaggcctggaaacgcatcgacgcgttgctggccaagcaccgcccgggcaag
acccccctgcgcctggacctgctgctgcgtgcccagagcggcggcgtcgccggcatgctc
gacctcaacggcagccactcggtccgcatcgaccagcagctgatggacagcctgcgtgcc
gatccggcggtgcggaccttgaagatcaagtacagccctccgtgggcgtga
DBGET
integrated database retrieval system
