Xanthomonas hydrangeae: LMG31886_39670
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Entry
LMG31886_39670 CDS
T07925
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
xhd
Xanthomonas hydrangeae
Pathway
xhd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xhd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LMG31886_39670 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xhd03019
]
LMG31886_39670 (rhlB)
Enzymes [BR:
xhd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LMG31886_39670 (rhlB)
Messenger RNA biogenesis [BR:
xhd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LMG31886_39670 (rhlB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
RhlB
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
CAD7745891
LinkDB
All DBs
Position
LMG31886:complement(4617884..4619665)
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AA seq
593 aa
AA seq
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MQAAPGLPRAPHEDGIMSDKPLTDLTFSTFDLHPALIAGLESAGFTRCTPIQALTLPVAL
PGGDVAGQAQTGTGKTLAFLVTVVNRLLNRPALADRKPEDPRALILAPTRELAIQIHKDA
VKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICV
LDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVET
ETITAARVRQRIYFPSDEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRV
GVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHR
IGRTARLGEEGDAISFACERYAMSLPDIEAYIAQKIPVEPVTSELLIPLPRAARVPVEGE
EVDADAGDSVGTIFREAREQRAAEEQRRGGGRSGPGGASRGSSSGGGRRDGGSADSKPRP
RRKPRVEGDVAAETATVAAASETPVVAAAAAQAPSTGVADAERAPRKRRRRRNGRPVEGA
EPAVASTPVAAPAAPRKPTQVVAKPVRSATKPSGSPSLLSRIGRRLRSLVSGN
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atgcaagccgcgcccgggctgcccagggcgcctcacgaagacggaataatgagcgacaaa
ccgctgaccgatttgactttttccacgttcgacctgcatccggcgctgatcgccgggctg
gagagcgccgggttcacccgctgtaccccgatccaggcactgaccctgccggtcgcgctg
ccgggcggcgatgtcgcaggccaggcccagaccggcaccggcaagacgctggcgttcctg
gtgacggtggtgaaccgcctgctgaaccgcccggcgctggccgaccgcaagccggaagac
ccgcgcgcgctgatcctggccccgacccgcgagctggcgatccagatccacaaggatgct
gtcaagttcggcgccgacctgggcctgcgctttgcgctggtctacggcggggtggactac
gacaagcagcgcgagctgttgcagcagggcgtggacgtgatcatcgccaccccgggccgg
ctgatcgactacgtcaagcagcacaaggtggtctcgctgcacgcctgcgagatctgtgtg
ctggacgaagccgatcgcatgttcgatctgggcttcatcaaggacatccgcttcctgctg
cggcgcatgcccgagcgcggcacccggcagacgctgctgttctcggccacgctcagccat
cgcgtgctcgagctcgcctacgagcacatgaacgagccggaaaagctcgtggtcgaaacc
gagaccatcactgccgcacgcgtacgtcagcgcatctatttcccctccgacgaagagaag
cagacgctgctgctgggcttgctgtcgcgtagcgaaggcgcgcgcaccatggtgttcgtc
aacaccaaggccttcgtcgagcgcgtcgcgcgcacgctggagcggcatggctaccgggtc
ggcgtgttgtccggcgatgtgccgcaaaagaagcgcgagtcgctgctcaaccgcttccag
aagggccagctcgagatcctggtcgccaccgatgtggccgcgcgcggcctgcacatcgac
ggcgtcaagtacgtttacaactacgacctgccgttcgatgcggaagactacgtgcaccgc
atcggccgtaccgcgcggctgggcgaagaaggcgatgcgatcagcttcgcctgcgagcgc
tatgcgatgagcctgccggacatcgaggcctacatcgcgcagaagatcccggtcgagccg
gtgacctccgaactgctgatcccgttgccgcgtgccgcacgcgtgccggtggaaggcgaa
gaggtcgacgccgacgccggcgacagcgtgggcacgatcttccgcgaggcgcgcgaacag
cgtgccgccgaagagcagcgtcgtggcggtggccgcagcggcccgggtggcgcctcgcgc
ggcagcagcagtggtggcggtcgccgtgacggcggcagtgccgatagcaagccgcgtccg
cgccgcaagccgcgagtcgaaggcgacgttgccgccgagaccgcaaccgttgccgcagcc
tcggaaacgcccgtggtcgcagcagcggctgcgcaagcgccatccaccggcgtggccgat
gccgagcgcgcaccgcgcaagcgtcgccgccgccgcaacggtcgtccggtcgaaggtgcc
gagcctgcagtggcgtccacaccggttgccgcgccggccgcaccgcgcaagccgacccag
gtggtcgcaaagccggtgcgcagtgcgaccaagccgtcgggtagcccgtcgctgctgagt
cgtatcggccgcagattgcgttcgctggtctccggcaactga
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