Xanthomonas hydrangeae: LMG31886_44240
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Entry
LMG31886_44240 CDS
T07925
Symbol
rep_2
Name
(GenBank) ATP-dependent DNA helicase Rep
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
xhd
Xanthomonas hydrangeae
Pathway
xhd03420
Nucleotide excision repair
xhd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xhd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LMG31886_44240 (rep_2)
03430 Mismatch repair
LMG31886_44240 (rep_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xhd03400
]
LMG31886_44240 (rep_2)
Enzymes [BR:
xhd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LMG31886_44240 (rep_2)
DNA repair and recombination proteins [BR:
xhd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LMG31886_44240 (rep_2)
MMR (mismatch excision repair)
Other MMR factors
LMG31886_44240 (rep_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
AAA_30
UvrD_C_2
UvrD_C
AAA_11
Motif
Other DBs
NCBI-ProteinID:
CAD7747716
LinkDB
All DBs
Position
LMG31886:5165626..5167503
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AA seq
625 aa
AA seq
DB search
MTSRIGSPDTPADLEVRACLDREPPRSFVVVAGAGSGKTTSLIKALAHLGETRGPALRRA
GQKIACITYTEVAVGEISEDVGVSPLFQISTIHSFLWSIVRPFHSDILVWVQDRIKEKIA
ERCEHFNKPRTQEKTKARLEQEMVDLEAELAEVHKVEKFDYGTGSSYAEGILGHDDILKL
APACIVVRPLLRQVIAARFPYIFVDESQDTHPDVVMALQTIAAEHPELCVGFFGDPMQRI
YMGGAGPIELGEDWSEITKPENFRCPRAVLDVINAIRAEGDGLEQTRGRTRMVDGHEQPV
EGTSNLFVLPSDGDRTACLMAVRQWLSEQTDDTQWLNDVRESDVRLLVLVHRMAASRLGF
PSLYAALNDRAPMSLSEGLSDGTAWPLLPFVQHILPLVVSEQAGENFNVISILRSVSPKL
EPDRLSGQDTATVLSDLQQAVRTLVELLAEGSQATILDVLKHVRDSELLRLDDRFDAHLA
DDPQNNHTSGYDNVQAFIACGIQNLWAYQRYFSEESPFATHHGVKGAQFERVLVVIDDDE
ANYRQYSYGKYLGYTPLSENDDEHIAAGEESVLDRTRRLFYVCCSRATKDLAVVIFVPNV
EVARAAIIEKKLFPQNVIRGAELLG
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgacaagccgaatcggaagtcccgacacgccggccgatctagaagtccgggcgtgcctt
gatcgagagccacctcgctctttcgtagtggtggcgggtgcgggctcgggcaaaactact
tcgctcatcaaagcgcttgctcacctaggcgagacacgtggacctgctctacgtcgcgcc
ggacagaagatcgcgtgcattacctataccgaagtggccgtgggtgaaatatcggaagat
gtaggtgtctcgcctctgttccaaatctctaccatccacagcttcctttggtcgatagtt
aggccattccattcagacatccttgtatgggttcaggatcgcatcaaggagaagattgca
gagcggtgcgaacacttcaataagccgaggactcaggagaagaccaaggcccgtcttgag
caggagatggtcgatcttgaggccgaacttgcagaagtacataaagttgagaagttcgat
tacggaaccggaagtagttatgccgagggcatcctcggccatgacgacatattgaagctc
gcgccggcctgcatcgttgtgcgccccctactgagacaggtcatagcggcgcgcttcccc
tacatttttgttgatgagagtcaggacacccatccggacgttgtcatggcactgcagacc
attgccgctgagcatccggagctgtgcgttggcttcttcggagatccaatgcaacggatc
tacatgggcggagctggtcccatcgagctcggcgaagactggtcggagattaccaagccc
gagaacttcaggtgtccgagagcagtgctcgacgtcatcaatgctatcagagccgaaggc
gacgggctggaacaaactcgtggccggactcgaatggtggatggccatgagcagccggtg
gaagggaccagcaatcttttcgtcctgccgtccgacggagatcgaactgcatgcctaatg
gccgtcaggcaatggctttctgagcagacagatgacacgcagtggctaaatgatgtgcgc
gaaagcgatgtgcgcctgctcgtactggttcaccgcatggcagcgagccgcctcggcttc
cctagcctgtacgccgcactcaatgatcgcgcgccaatgagtctgagtgagggtctcagc
gatggaaccgcgtggccactactgcccttcgttcaacacattcttccgctcgttgtctca
gagcaagcgggcgaaaatttcaatgtcatttccatcttgcgcagtgtgagtccgaaactc
gagccggacaggttaagtggacaagatactgcgactgtcctcagtgacctacagcaagcg
gttcgaacgcttgtcgagctgcttgcggaaggctcacaggcaactattttggacgtcctt
aaacatgtgcgtgatagcgagctgcttagactcgacgatcgattcgacgcgcatctagcc
gacgatccgcagaacaaccacactagtggctacgacaacgttcaagccttcatagcctgt
ggaatacaaaatctgtgggcctatcaacgttatttttccgaagaatcacccttcgctacc
catcacggcgtcaaaggtgcgcagttcgagcgcgtcctggttgtaatcgatgacgatgag
gctaactaccggcagtactcttacggcaaataccttggctatacgcccctgtcggagaat
gacgatgaacacattgctgcaggcgaagaatcagtgcttgatcgaacacgaagacttttc
tacgtttgctgctcacgtgcgactaaagacttggcagtggtgatctttgttcccaacgtt
gaagtggcacgagcagcgatcattgaaaaaaagcttttccctcaaaacgtgatccgagga
gccgagcttcttgggtag
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