Xiphophorus hellerii (green swordtail): 116707613 Help Entry 116707613         CDS       T07363                                  Name (RefSeq) collagen alpha-1(I) chain-like   KO K06237   collagen type IV alpha Organism xhe  Xiphophorus hellerii (green swordtail) Pathway xhe04382   Cornified envelope formation xhe04510   Focal adhesion xhe04512   ECM-receptor interaction xhe04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:xhe00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     116707613  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     116707613   09142 Cell motility    04820 Cytoskeleton in muscle cells     116707613  09150 Organismal Systems   09158 Development and regeneration    04382 Cornified envelope formation     116707613  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    04147 Exosome [BR:xhe04147]     116707613    00536 Glycosaminoglycan binding proteins [BR:xhe00536]     116707613 Exosome [BR:xhe04147]  Exosomal proteins   Exosomal proteins of other cancer cells    116707613 Glycosaminoglycan binding proteins [BR:xhe00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    116707613 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen C4 Motif Other DBs NCBI-GeneID:  116707613 NCBI-ProteinID:  XP_032400920 LinkDB All DBs Position 18:1629437..1658292 Genome browser AA seq 1674 aa AA seqDB search MASPAAARRKIPRLLVRLLVLGALLLLADGKLVCHCTGKSRCHCEGVKGQKGEAGYTGDP GLPGVMGFPGSEGHQGSPGEKGNPGNAGIVGIKGSRGPPGTPGFPGPPGLPGLPGHEGPM GQPGLPGCNGTKGEAGYRGVPGPSGPPGSRGAPGPQGMKGDSVVIPLSQEIKGAAGPQGP TGKKGQSGHGGEPGEPGRPGAHGLPGRRGSAGIEGEKGQEGSSPTSPGPQGGKGDRGPPG IPGKQGIKLFAEGPKELKGEPGEVGQKGFPGLPGEPGSLGAKGEKGDRGEPGSLGKPGKT GLLGELGQPGDPGEFGFIGPPGVDGAAGEKGDRGPPGPPGQTISNYISVKGQRGFPGPFG PAGFLGIQGPIGFPGLKGESGEASNGPPGSPGPTGSGGPKGEPGPPGLVVTGPPGLTGAP GPLGLQGEPGEPGIPNMDIIGQGVLGTTGSKGSRGPPGDKGAVGEKGQKGQVCIDCHFQA GPPGPQGPPGAPGQNGLPGAAGSPGPAGNKGFKGAAGPPGEQGPRGPQGSPGAPGAPGEP GSNPRPGQKGEAGDQGDAGLRGKAGQHGYPGPPGPKGETGQKGNPGLQGSKGHRGLPGPS GARGVTGPPGPPGRSRPGCPGPMGPKGANGYMGDRGAPGPRGEKGSKGNIWNIPGEPGPK GSRGQPGETGPEGENGLLGLRGCTGPKGQKGNDSFSHKGNRGNAGSKGVKGSRGEPGFPC YGMKGRVGPPGPPGPVGQKGNRGFGLPGEAGKPGPRGQDACDGPPGDPGPPGRPGVQGPA GQNGCQGPKGHRGVDGEPGSTGPPGPCVPGCPGPPGLRGPAGPIGPTGTKGPPGLKGDPG THCPRVPGLRGPPAPPGPDGVPGLAGEVGPKGWRGNPGEPGGPGPRGDMGVPGPMGCPGN HGPPGTCGEPGPKGQRGRDGSRGSQGPPGEPGDKGGTGPKGFPTVIRTTGNPGDSGFPGP RGFTGEKGQGGPPGNRGPKGLDGKSGETGPPGCPGDPGRDGERGPCGFTGPPGDKGFTGR PGDPGEKGATGTNGLPGSDGGSGKPGDKGRKGEAGCGWGAKGCKGMKGIPGRPGPSGPKG PGGPAGDVGPLGPCGPCGFVGSKGPPGCKGSPGRAGEKGWDGPPGICGPPGPPGNPGCWG SPGAPGPLGPKGNQGRDGIPGPDGEKGDMGSCVPGPKGPTGRRGPPGCVGDRGPLGCCGP PGPCGPAGDPGYKGAKGPPGPPGCAGKKGGECIDGTKGYKGFPGPKGPKGPKGPSGPPGP PGPGYKGHKGVKGEPGPPGPPGPIGDLGPCGPPGPWGPPGYPGKKGYRGPVGAKGSIGME GEKGPPGNPGPGGPAGRIGNPGPSGKDSYFPVQLVSGDPGEEGALGQVGGVGSPGFPGLR GAYGSKGSSGAPGWTGTPGRDGLRGEDGERGRIGQKGANGERGRVGAKGPPGEPGEPSEP GAGPPPRRNGFLFSRHSQDSAAPACPAQSTLIFRGYSLLFINGYSRAHGQDLGTVGSCLQ RFSTAPFLICETGEECRYAERNDFSYWLSNIRSPINQTDPEAALESKISKCSVCESEANV IAIHSQTSAVPPCPADWQSLWTGFSFVMETGVGAEGSGQPLVSPGSCLENFQGMPFMECS GSSGTCKYDNSLYSYWLAALDPDNMFRRPSSWILPGNNPDNISRCRVCMKIMQM NT seq 5025 nt NT seq  +upstreamnt  +downstreamnt atggcgtctccggcggctgcgaggcggaagatcccccgcctgctggtccggctgctggtc ctcggcgcgctgctgctgctggccgacggcaaactggtctgccactgcaccgggaagtcc cgctgtcactgcgagggggtcaaaggtcaaaagggagaagcaggatacacaggagaccca ggacttcctggagtgatgggatttcctggaagcgaaggtcaccaagggtcaccaggagaa aagggtaaccccggaaacgcaggcattgtaggaattaagggctctcggggacctccagga acaccaggttttccaggacctccaggtctcccagggcttcctgggcacgaagggccaatg ggtcaacccgggctcccaggatgcaacgggacaaaaggggaggccggctaccgaggggtt cctggaccttcaggaccgccgggatcacggggggccccggggccacaaggcatgaaggga gactcggtcgtgattcccctcagtcaggaaataaaaggagcagcgggaccacaagggcca accggcaaaaaggggcaaagcggacatggaggagaaccgggcgaaccgggacggcccgga gcccatggacttcctggaagacgaggatctgcaggaattgaaggagaaaagggtcaggaa ggttccagtccgacgagtcccggtccgcagggagggaagggcgatcgcggccctccaggg atccccgggaagcagggcatcaaactcttcgctgaaggacccaaagagctgaagggcgag ccgggcgaagtggggcagaaaggtttccccggtcttcctggggagccggggagcctgggg gcgaaaggagagaagggtgacagaggagaacctggctcactgggaaaaccagggaagaca ggattactgggagaactgggacagccgggcgaccccggagagttcggcttcatcggcccg cccggcgtcgacggcgccgcgggagaaaaaggcgaccgagggcctccaggtcccccagga cagaccatctctaattacatatccgtgaagggccagcgaggtttccccgggccctttgga cccgccgggttcctcgggattcaaggtccgatcgggttcccgggactgaagggcgagtca ggcgaggcctccaacggaccgccaggttctcctggtccaactggctcagggggtcccaaa ggggaaccaggaccgccgggcctggtggttaccggaccgccaggattgaccggagcccca ggacctcttggacttcagggagagccaggagagcctggaataccaaacatggacatcata ggacagggtgttcttggtacgacaggttcaaaaggctctcgaggccctccaggggacaaa ggggcggttggggaaaagggtcagaaagggcaggtttgtatagactgccattttcaggct ggtcctcctggacctcagggaccaccaggggcgccaggtcagaacgggttgccaggtgcg gctggatctccaggaccagcaggtaataaaggcttcaaaggagccgcaggcccacctgga gaacagggcccccggggcccccagggctccccgggggccccgggggctccaggcgagccg gggtcaaaccctcggccggggcagaagggggaggccggggaccagggcgatgcggggctg cggggaaaggcggggcagcacggatacccaggaccgccgggtcccaaaggcgaaacggga cagaaaggaaacccggggcttcaggggtcaaaaggtcaccggggcctgccgggcccctct ggtgccagaggagtgacggggccaccgggcccaccgggccgcagccgtcctggttgtcca ggaccgatggggcccaaaggagctaacggctacatgggagaccgtggagcaccgggcccc agaggagagaaaggctctaaggggaacatctggaacattccaggagaaccgggaccgaaa ggctccagaggacagccgggggaaaccggacctgaaggtgagaacggacttctgggtctc cgaggatgtactggtccaaaaggtcaaaagggcaatgacagtttctctcacaagggtaac cggggcaacgcggggtcaaaaggagtcaaggggtccagaggagagccagggttcccctgt tatggcatgaaggggcgagtggggccgcccggccccccagggcccgtcggccaaaagggg aacagaggttttgggctgccgggtgaggcgggtaaaccaggccctcgggggcaggatgcc tgtgacggacctccgggcgatccgggaccgccgggacggccaggagttcagggacctgca ggacaaaatggctgccaggggcccaaaggtcaccgaggcgttgatggggaacctggttcc acgggtccacctgggccctgtgtccccggatgtccaggacctccaggactgcgaggtcca gcgggtccaattggacccacaggaacgaaggggccgccgggtctgaagggagatcctggg acccactgccccagagtccccgggctcagagggccaccggcgccaccgggacccgatgga gttccagggctggccggggaagtgggacccaaaggctggagagggaatcccggagagcct ggaggcccagggccgagaggagacatgggtgttccagggccgatggggtgtcctggaaac cacggaccgcctgggacctgcggggaaccgggaccaaaaggtcagaggggtcgagatggt tcaagaggttctcagggacctccaggagagccaggggacaaagggggaactggaccaaaa gggttcccaacagtcattaggacaacggggaatcccggagactctggatttccaggaccc agaggtttcactggggaaaagggacaaggaggccccccagggaaccgagggccaaagggc ctggatggaaaatctggagagacggggccaccaggatgtcctggagatccaggtagagat ggagagagaggtccttgtggtttcactggacccccaggggacaagggattcactggtaga ccaggtgatccaggtgaaaaaggtgcaacgggaaccaatgggctccctggttcagatgga gggtcagggaaacccggagataagggacgtaaaggagaagcaggttgtggatggggagct aaaggctgtaaaggaatgaaggggattcctggacgtccaggaccttcaggtccaaaagga ccaggaggaccagctggagacgttggccctctggggccctgcggtccttgtggatttgtg ggatccaaagggccacctggatgcaaaggttctcctggtagagccggtgagaaaggttgg gacggcccgcctgggatctgtggccctccagggcctcctggaaatccaggatgctggggg tctcctggagctcctggtccactgggacccaaaggaaaccagggccgggacgggatcccc gggcctgacggagagaaaggagatatgggctcatgtgtacctggaccgaaggggccgaca ggacgaagaggtccccctggatgcgtgggggacaggggcccgctgggatgctgtgggcct cctggaccctgtggacctgcaggagacccgggttacaaaggcgctaagggacccccaggg cctcctggatgtgctgggaagaaagggggagagtgcattgatgggacaaagggatataaa ggatttcctggacctaaaggaccgaaaggccctaagggtccgtccggtccacctggtcca ccaggtcctggttacaaaggccataaaggtgttaaaggagaaccgggtcccccaggacca ccgggaccaatcggtgacctcggtccttgtggacctcctggtccttgggggccgcctgga tatcctggaaaaaaaggctacagaggaccggttggagcaaagggttcaatcggtatggaa ggggagaaaggaccgccaggtaaccccggtccgggaggaccagcaggacgaatcgggaac ccgggaccaagtgggaaggactcatattttcctgtgcagctggtatcaggagacccaggt gaagaaggagctctaggccaagtgggaggagtcggatcgccgggtttccctggattgagg ggagcttatggttcaaaaggctcatctggagcaccgggttggacaggaacacctgggcgc gacggactgagaggagaggatggagagagaggacgaatcggccagaaaggtgcgaatgga gagcgtggcagagtgggagccaagggtcctccaggtgagccaggtgaaccaagtgagcca ggcgccggcccgccacccaggaggaacggcttcctgttcagcagacacagccaggacagc gccgcccctgcctgcccggcccagtccacgctcatattcagaggatactcactgctcttc atcaacggctacagccgcgctcacggacaggacctgggaacggtcggcagctgcctgcag cgtttcagcaccgctcccttcctgatctgtgagactggagaggaatgtcgatacgctgag aggaacgacttttcctactggctgtccaacatcaggagcccgataaaccagaccgaccca gaggcggcgctggagtccaagatcagcaagtgttcggtgtgcgagtctgaagccaacgtg atcgccatccacagccagaccagcgccgtcccgccctgccctgcggactggcagtcgctc tggaccggattctcctttgtgatggaaacgggtgtaggcgccgagggctcgggtcagcct ctggtttctcccggatcctgcctggaaaacttccaaggaatgccgttcatggagtgcagc ggcagctcaggaacctgcaagtacgacaacagcctgtacagctactggctggctgctctg gaccctgacaacatgttcaggaggcccagcagctggatccttccagggaacaacccagac aacatcagccgctgcagagtctgcatgaagatcatgcagatgtga

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