Xiphophorus hellerii (green swordtail): 116707723
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Entry
116707723 CDS
T07363
Symbol
cspg4
Name
(RefSeq) chondroitin sulfate proteoglycan 4
KO
K08115
chondroitin sulfate proteoglycan 4
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
xhe00535
]
116707723 (cspg4)
04091 Lectins [BR:
xhe04091
]
116707723 (cspg4)
Proteoglycans [BR:
xhe00535
]
Cell surface proteoglycans
Others
116707723 (cspg4)
Lectins [BR:
xhe04091
]
C-Type lectins
Others
116707723 (cspg4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Laminin_G_2
Laminin_G_1
Cadherin_4
DAG1
Motif
Other DBs
NCBI-GeneID:
116707723
NCBI-ProteinID:
XP_032401104
LinkDB
All DBs
Position
2:27598244..27691505
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AA seq
2294 aa
AA seq
DB search
MRALHPVLVGALVTLLLCLPGPAHGESYFGDSHCSIVAVQDVSTFQLSLKFKTSRRSGLL
LLAAGMEDYLILELLNGKLQARMKVGAGEVMLSSSQDVPLNNLRDHQVFLTLQDGKLTMM
IVHLFSTYVPVDLGGERLNIDRGIWLGGTGDLDTPYLRNAIPPFRGCITDVKFESHQFNI
LNSAFKQCQDTKESCSSEFEHRDGETISFSTPDSFVSFSTWSESANAPMSLEFLMKTTIE
DALLVFHHGQKSDFIAIGVVKGYLNGVLDLGDGLKSLENTQVQLDDDQWHRVQIQVSPDS
FVLKVDSQSSSIPLDSSQKLDLVGNLYFGGIQKKMKEVFSESGSLNRFEDYITSESFIGC
FGGIKVNQRDKGLQDALVTKDVHIKCEGDDYDYSTYDEFDGPTTSSPIVDFVTQFAEPQL
NDQECYPNNFEPEVFRNVTKLLNITTLRVPDGEEAYLDINNLRPTFDLSAAGLSQSQIIF
TLTGDPWYGLVDVNVNRNTEKFSLLDVVDKKIKYMHDGNGGTSDKISLYVRVLSNSYLPG
CLKGTHSYSIPVEIIPGRASPGSTVELPITEKGRSHLSPNLLKISQSASNCDQLVITVTS
APSFDFGYLVNSQQPGRKISEFTCRDLKDGNIYFVHKAGSTSEMTLKVSEGGSVTQSSTF
MLLAIQPNAVIVGTTGLSVVQGSNASIGIQDLAVSHHPRNGDILYIVTQPPVLGELRVRG
RDGMYTQVTSFHQFHLDRELIRYFSTDTDSHEDTAVDNILFDIHLGEFVLTNNLFRVEIQ
PPKVKVSYLEPLEAKPGEKQIITKLQAEVQGKTPNPQTIKYILVKSPAHGSLQISDKELN
KGDMFTQKDILDNALSYIVRMQGFVDTNDQFQFRVSVEDQYSPLYSFPISILAGTDDYVL
TNKHLVVLQGGELALNKNHLWLQFSVSQDILYRVTQEPKHGRLIRDTPGLPRFDGAVKYF
SNEDLVHGQLIYKHDGSRTTSDEFHFSATQQDTDSPKVVTGIFKIQIQFKNEHVPVRIVD
KVFNVVRRGQRLLTTNIIQFKDDDSNFNDTQIVYAREGILSGNIMSASNPSQPVFRFTQA
DLRDKNILFVHHGADQERFPLQVSDGFHKTTAMLQIQAGEPYLQLVNNTMIVIDHGSTKT
LNTSLLSADSNMDIRDESEIKFEVTSPPSDGRIIVSGIEASQFTQEDLKKGVISYEHNYE
SLKAKDSFGFTVRAKELSEKGIFKIKIFKQGYLSEPEVITNEVIISYEGEHTIISQDHLK
VEQTDILPTDMIFTLKRLPNLGHVVMLKNSSEDAASPVLDYIHSFSQEDINLSRVFYVSA
SLQGSDSFTLDVSNGFSTVEDLTVKVDIMPRFIPIQASNFSIKEGLSRVINEEILNISNH
FYSLVNIDFSVEELPQHGEIRNLEGDELSYFTWDDVKFGQVFYMHDSSETMEDSFTLSAS
SYEIERRSLPVTISVTIIPVNDEPPMVTRNTGLEVLPGEQVAITANVLSTEDADTPAEEL
VYHVEMPTNGLMTLKQEPGQSIQNFSQAQLNRGEIIFTHEGEESGEFSFTVTDGEHTSPL
YRFVIKARPHIITLETGEELMVFPGTRQVIKNANLKVGTSKDGNEASFLLVRAPRLGRLI
LANERNQLVETNLFSQSQLESGAVYYEHQLPTEPFWVVRDSMEFTVSPQTSADVRHALPI
TVSYYAAHSNISSQMWRNKGLEIVQGQRKAIDNSIFDASNLLASLPEEKKTDADVLFEIK
RFPDHGRITLRGEDLPRDDPLFTQSDVSQGKLEYLHDDSGAAFDSLAFKAYLKLGSGGRA
PPAESVILDEIFHISVKRRGSNPPELVTTDMLLEVLQGSKISLTQKHLNTQDEDNPPDEV
LFKVTKAPRNGYLLNSVTSEPLSKFTQEMINRVEVAFQSDGTLKGGFVEFTISDGEHETE
PHTLHIGILAHTLLLKQVPEIKVRQGDDQILVTEEMLRASTGGPVEEDILYKITNTPKYA
AVMVDRQPTSAFTQKQIKEGRVSVRFVKSTSPRDSVSFTARSRAANVSSVLNITVQPLAK
IAQNPLLPQGSLVQLDRKLLDASPLANKTRASPTFTVIQQPRGARIVEFKDPDAGQPIQT
FTQKDLDEGRVAMEILDTASRSKAKGTQDEARFLLKAHGVPPAECVLSFQTSPYNTSAVY
PATLLKNPDKRFRPPGDSVTPSSPDSGTHGKPHVSRRGNFWSIFIPILVVLLLLLLAGVL
AYYLIRKNKTGKHNVQTATSKPKNGEVATTETFRKTDPANNIPMSNVDSKGADPELLQHC
RTTNPALKKNQYWV
NT seq
6885 nt
NT seq
+upstream
nt +downstream
nt
atgcgagccctgcatccagtcctggttggtgccttggtgaccctgctgctctgcctgccc
ggccccgcacacggagaatcctactttggggatagccactgtagcatagtagccgtccaa
gatgtctcaaccttccagctgtctctgaagttcaaaacgagtcgccgaagtggtcttctg
cttctggctgctggaatggaggactacctgatcctggagttgctaaatgggaaactacag
gcacgaatgaaagtgggagctggagaagtcatgctgtcctcttctcaagatgtgccgttg
aacaacctgagggaccaccaggtgtttctgacattgcaagatggcaagctcaccatgatg
atagttcatctgttttcaacatacgtccctgtggatcttggtggggaaaggctaaatatc
gaccgtggcatttggcttggaggaaccggtgacctggacactccctatctcaggaacgcc
atccctcctttccgtggctgcattaccgacgttaaatttgaatcccatcagtttaacatt
ctcaactcggcatttaagcagtgccaagacaccaaggaatcttgcagcagtgagtttgag
catagagacggggagacaatcagtttcagcactccagattcctttgtgtccttctctaca
tggagtgaatctgctaatgctccaatgtcactggagtttctaatgaaaaccaccatagag
gatgctttacttgtcttccaccatggccaaaagtcagactttattgccatcggtgttgta
aaaggctatctcaacggggttttggatctaggagatggtttaaagtcacttgaaaataca
caggtgcagctggatgatgaccagtggcacagggtccagattcaggttagcccggattct
tttgttcttaaagtagacagccaatcatcctccattcctctcgactcatcacaaaaactg
gatttggtaggaaacctgtactttggaggcatccagaagaagatgaaggaagtatttagt
gaaagtgggtccttgaatcgttttgaggactacatcacatctgagtctttcattggatgc
tttgggggaattaaagtaaatcaacgggacaaaggtctgcaggatgctttggtgaccaaa
gatgtacatataaaatgtgaaggagatgactatgactactcaacttatgatgaatttgat
ggacccaccacttcctcacccattgttgatttcgtaactcaatttgctgaacctcaatta
aacgaccaagaatgttatccaaacaattttgaacctgaggtgttcagaaatgtaacaaaa
cttctcaacatcaccactttgcgagtacctgatggtgaagaagcctatcttgatatcaac
aatctgagaccaacatttgacctcagcgctgctgggttgagccaatcgcaaattatcttt
acactcaccggtgatccctggtatggcctggttgacgttaatgtcaatagaaacactgaa
aaattctctctgcttgatgtggtcgacaagaaaatcaagtatatgcatgatggaaatgga
ggaaccagtgataagatctccttatatgtacgtgttctaagtaacagctaccttccaggg
tgcctaaaaggtacccacagttattcgattccggtggaaattattccaggcagggcctca
ccaggatccactgtagaacttcctatcacagaaaagggaagatctcatttgagccccaac
cttcttaaaataagtcaatccgcctccaattgtgaccagttagtaataactgtgacctcg
gctccctcttttgattttggttacctggtaaatagtcagcaaccaggaagaaaaatctca
gagtttacatgcagagacctgaaagatggaaatatctattttgtacacaaagcaggcagt
accagtgaaatgaccttgaaagtgtcggagggtgggtcagtaactcagtcaagcactttt
atgttgttggcgatacaaccaaatgcagtcattgtcggcaccactggccttagcgtagtc
caagggagcaatgcgtcaatagggattcaggatctggctgtcagccatcatcctcgtaat
ggggatattttatatatcgtcacacaacctcctgtgttaggagaattaagagttagagga
agagatggcatgtacacgcaagttacaagttttcatcagtttcatctggatcgagagcta
attaggtattttagcacagatacagatagccatgaagacactgcggtggataacattctg
tttgacatccatttgggagagtttgttctcacaaacaacctcttccgagttgagatccaa
cctcccaaagtaaaagtttcatatctggaacctctggaagccaaacctggagagaagcag
ataatcacaaagcttcaggctgaagtgcaaggcaaaaccccaaatccgcaaacaattaaa
tacattcttgtgaagtctcctgcacatggtagcctccagatatcagacaaagagttgaac
aagggtgacatgttcacacagaaggacattttggacaatgctttaagttacatagtgcgg
atgcaaggctttgtggatactaatgaccagtttcagtttagagtctctgttgaggaccag
tattctccattatacagcttcccaataagcatacttgctggaacggatgactatgttttg
acaaataagcatcttgttgttttacaaggaggtgagctagctttgaacaaaaaccatctc
tggctgcagttttcagtttctcaggacattttgtatagagtcacacaagaaccaaagcat
ggacgccttataagggataccccaggactgcctagatttgatggggcagttaaatatttt
agtaatgaagatcttgtacatggtcagctgatttacaagcatgatggctccaggactaca
agcgacgagttccacttctcagccactcagcaagatacagacagtccaaaagtggtgacg
ggtatcttcaaaatacagattcaattcaagaatgagcacgtcccagtgaggatagtggat
aaagtcttcaacgtggtccgccggggtcagcgcttgctcacaaccaacatcattcagttt
aaagacgatgactcaaatttcaatgacactcaaattgtctatgccagagaaggaattctt
tcgggcaatatcatgtcagcgtccaatccatcgcagccagttttccgttttacacaagct
gacctgagggacaagaacatcttattcgtccatcatggagcagatcaagaacggtttcct
ctgcaggtttcagacggctttcataaaaccaccgcgatgcttcagatccaagctggtgag
ccctaccttcaattggtgaacaacacaatgatcgtcattgaccatggaagtaccaagacc
ctaaataccagcctattgagcgcagactccaacatggacatcagagatgaaagcgagatt
aagttcgaggttacttccccacccagcgatggcaggattatcgtgagtgggattgaggct
tcacaattcacccaggaggacttgaaaaagggagtcatctcatatgagcacaattatgaa
agccttaaggccaaggattcctttggtttcacagtgcgagcaaaggaactttctgaaaaa
ggcatatttaagataaagatttttaaacaaggttacctttcagagccagaggtgataacc
aatgaggtcatcatttcttatgagggggagcacaccataatcagccaggatcatctcaag
gtggagcagaccgatatccttcctacagacatgattttcacactgaaaagattacctaat
ctgggtcatgtggtcatgctgaaaaacagttcagaggacgcagcctctccggtcctcgac
tacatccactctttctctcaggaagacatcaatctgagccgagtcttctacgtgtctgca
tctttgcagggaagcgacagtttcacgttggatgtgagcaatggtttcagcacggtggag
gacctgaccgtcaaggtggacatcatgccccgatttatacccattcaggcgtccaacttc
tccatcaaggaaggcctcagtcgagtgattaacgaggagattctgaacatctcgaatcat
ttctacagcttagtaaacatcgacttttctgtggaggagcttccgcagcacggtgaaatc
cgcaacctggaaggagacgagctttcttactttacatgggatgatgtaaaatttggacag
gtcttctacatgcacgacagcagcgagaccatggaggacagttttacactctctgcctcg
tcgtacgagattgagcgccgcagcctccctgtcaccatctcagtcaccatcataccggtg
aacgatgagccgccaatggtgacacgcaacaccggcctggaggttcttcccggcgagcaa
gtcgccatcactgccaatgtgctgagcacagaggacgccgatacccccgcggaggagctg
gtttaccacgtagaaatgccaaccaacgggctgatgacattaaaacaggagccggggcag
agcattcagaatttctcccaggctcaactaaacagaggggagatcatcttcacccacgag
ggtgaagaatccggtgagttcagcttcacggtgacagatggagagcacacgtctcctctc
tatcgatttgtcatcaaggccaggcctcacatcatcaccttggaaacaggggaggaactc
atggtgttcccaggaacacgacaggtcatcaagaatgctaaccttaaagttggaaccagc
aaggacgggaatgaagcgagcttcctgctcgtccgcgcgcctcgtttgggaaggcttatc
ctggccaatgagcggaaccagttagtagaaactaacttgttctcacagtcacagttggag
tctggagcagtctactatgagcaccagctgcccaccgagcctttctgggtggtgagagac
tctatggagttcactgtatcaccccagacttctgcagacgtccgccacgcgctgcccatc
acagtctcctactatgctgctcatagcaacatttcttctcagatgtggaggaacaaaggg
cttgaaattgtgcagggtcagagaaaagcaattgacaattccatttttgatgcctccaac
cttctggcaagtctacctgaagaaaagaaaacggacgcggacgttcttttcgaaataaag
cgcttccctgatcatggtcgtatcaccctacggggtgaggatctaccccgtgacgatccg
ctcttcacacaatcagacgtgtctcagggaaagttggagtatcttcacgatgactcgggg
gctgcttttgacagccttgctttcaaggcctatctgaagttaggaagtggtggtagggcc
ccccctgctgagtccgtaatcctggatgagatctttcatatttcagtcaaacgacgtggt
tccaacccccctgaattagtcactacagatatgcttctggaagttctccaaggctccaag
atctcactaacccagaagcatctcaacacccaagatgaagacaatccaccagatgaggtg
ctcttcaaggtgaccaaagcccctcgtaatggctatctccttaactctgttacgtcagaa
cctctctctaagttcactcaagaaatgatcaatcgcgtagaggtggccttccagagtgac
ggcacccttaaaggcggatttgtggaattcactatatcagatggcgagcatgaaacagag
ccgcacacactccacataggaatcttagctcacaccctgcttctcaaacaagtcccagag
atcaaggtacgacagggagacgatcagattcttgtgactgaggagatgctgagggcctct
acaggtggtcctgttgaggaggacatcctttataaaatcaccaatactccaaaatatgca
gctgtcatggtagacaggcagcctacatctgccttcacccagaagcagatcaaagaagga
agagtcagtgtccgttttgtcaagtccacttcaccccgagacagtgtttcatttacagcc
cgtagccgggctgccaatgtctcctctgtcctcaacatcactgtgcagcctctggctaaa
attgctcaaaatcctttattacctcaaggctcacttgtccagctggacagaaagcttttg
gatgcatctccactagccaacaagacaagagcctcacccacattcacagtcatccagcag
ccaagaggagctcgtattgtagagtttaaggatcctgatgctggccagccaatacagaca
ttcacccagaaggacctggatgaaggtcgggtagcaatggaaatattagatactgcctca
agatcaaaagcgaagggtactcaggatgaagctcggttcctgctaaaagcccatggagtc
cctccagcagaatgtgtcctttcattccagacaagcccttacaacacctctgcagtttat
cctgccactctgctaaagaatcctgataaaagattcaggcccccaggagatagtgtcacc
ccatcatcccctgactctggtacccacgggaaaccacacgtttcccgtcgtgggaatttt
tggtccatcttcattcccattctagttgtcctcctactcttactactggcaggcgtcttg
gcctactatctaatccgtaaaaacaagacaggaaaacacaacgtccagacagcgacctca
aagcccaaaaacggagaggtggccacaacggaaacctttcgcaaaacggacccagccaac
aacattcctatgtccaatgtggactctaaaggggcggatccagagttgcttcagcactgt
cggacaacgaacccggccttgaaaaagaaccagtactgggtttga
DBGET
integrated database retrieval system
