KEGG   Xiphophorus hellerii (green swordtail): 116707729
Entry
116707729         CDS       T07363                                 
Symbol
kdm5c
Name
(RefSeq) lysine-specific demethylase 5C isoform X1
  KO
K11446  [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67]
Organism
xhe  Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:xhe00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:xhe01009]
    116707729 (kdm5c)
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:xhe03036]
    116707729 (kdm5c)
Enzymes [BR:xhe01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.67  [histone H3]-trimethyl-L-lysine4 demethylase
     116707729 (kdm5c)
Protein phosphatases and associated proteins [BR:xhe01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     116707729 (kdm5c)
Chromosome and associated proteins [BR:xhe03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    116707729 (kdm5c)
SSDB
Motif
Pfam: PLU-1 JmjC KDM5_C-hel ARID zf-C5HC2 JmjN PHD PHDvar_NSD Peptidase_M17_N DUF3829_2nd
Other DBs
NCBI-GeneID: 116707729
NCBI-ProteinID: XP_032401165
LinkDB
Position
1:complement(25358899..25390539)
AA seq 1579 aa
MEVEEFIPPPECPVFEPSWEEFQDPLGYIAKIRPIAEKSGICKIRPPPDWQPPFSVELEN
FHFTPRIQRLNELEAETRVKLNYLDRIARFWEIQGSSLKIPHIERRILDLYSLSKIVADE
GGFELICKERRWARIAQRLGYPPGKNIGSLLRSHYERIVYPFEMFQSGASLTHCKPKHYD
GEDVDKEYKPHSIPLRQSVPPSKMNSYGRRANRCQPDGPEDLAPHPLTTGSQLISAPEPT
EEDIEKNPELKKLQIYGAGPKMMGLGLVARDKGFKKKDDLPQTVTIKDATLPASDDAPGD
APIKPEHLDPEEKQTDEGSSNLQLPPLTVTVKTEVKKEEVKAEYGEDDGSKMTMRLRRNI
TNPQCVDSFICRMCGRGDDDEKLLQCDSCDENYHTYCLLPPLTDPPKSKWRCPKCVAEEC
KKPSEAFGFEQATREYTLQSFGEMADSFKADYFNMPVHMVPTELVEREFWRLVSSIEEDV
TVEYGADIHSKEFGSGFPMNNGKKELTKEEEEYARSGWNLNVMPVLEQSLLCHINGDISG
MKVPWLYVGMVFSTFCWHIEDHWSYSINYLHWGEPKTWYGVPSAAAEQLEDVMKKLTPEL
FEYQPDLLHQLVTIMNPNILMAHGVPVVRTNQCAGEFVITFPRAYHSGFNQGYNFAEAVN
FCTADWLPAGRHCIEHYRRLRRYCVFSHEELTCKMAACPEKLDLNLAAATHREMFIIVQE
ERKLRKNLMERGITEAEREAFELLPDDERQCDKCKTTCFLSALACSNCPERLVCLYHTQD
LCNCPTEKLYLRYRYTLDELLAMLHRLKVRSESFDSWANRVKEALEQEEGHKIEILDLEK
LKTEAAEKRFPDNELLRKLNAVFKDIAFCHQKSAELLSNTKTGDDRMTLAELKSLVEKMQ
NLPCVIKHLKEVQVVLQTVEDFRKQAQVLVNNKDWRKESPPPEQLQSLLEDGGKLPVVVP
ECNLLQGLKAQGHWLEEVRRTLGTGGGEKHEVTLEVLRNLMEAGCNVAQSVSVETAMAEL
QELLTIAERWEEKAQICLEQRQKHPLSTLEAIVNEAQLIPVKLPNIEALRGCLTRAQAWV
TDLEEIQNGEHYPCLDDLEGLVAIGRDLPVLMEELRQLELQVTSAHSWRDKATKTFLKKS
SQHSLLEVLCPCVKRRERRTEPEPLDETLDDSDSNTLGLSAQALRDPAAIVLAFKEGEHQ
EKEALLRLQKLNLCKSGLSSASCKENGRWDETMDTDTSYRSEDSVKETRNGSRSATAQSV
CVCARPPRAPQLRCHLCKDWFHGGCVSFPSLLPPSSPQSNRLCWWDWDTRFLCPQCQRSR
RPRLATILALLVALQRLPVRLPEGEALQCLTERAITWQGRAKEALEMPELQRALQELQEL
AEKEEQKEKDAEGNSVIVLSDSEGGEGEDGVIDLTEDSSPIKKTKELDSSQAECQNGISK
KSNVTGVESLLPLLPLLKGRVVTLSPGAREQLEKLQLEGDLLEVTLDQTYTIHRVLQAAS
DPPRETLQTLIQIELEEQRGARTSRGRPKDKRKRKGHRGSSADAAGHQPQDASQSKKTCP
LKNSPTRPHSNVEIHPEIL
NT seq 4740 nt   +upstreamnt  +downstreamnt
atggaagtggaagagttcatcccccctccggagtgccccgtttttgagccgtcatgggag
gagttccaggatcccctgggctacatcgccaagatacgtccaatcgcagagaagtctgga
atctgcaaaatccgacctccgccggactggcagcctccgttttcggtggagttggaaaac
tttcactttactcctcgcatccagaggttaaacgaattggaggctgagaccagagtgaag
ctcaactatttggaccgcattgccagattttgggaaattcaaggttcttctttaaaaatc
ccacatatcgaaaggcgcattctggatctgtacagtttgtcaaagattgtggcggatgaa
ggaggctttgagctgatctgtaaggaacgacgatgggctcgtatagcgcagcggctcggc
taccctccagggaagaacatcgggtctttgctgcgctcacattatgagaggattgtctat
ccattcgaaatgttccagtctggcgccagcctgacgcattgcaagccaaagcactatgat
ggagaagatgtggataaggagtacaagcctcactccatcccgctgcgacagtctgtgccg
ccgtctaaaatgaacagctacggacgcagagcaaaccggtgccagcctgacggtccagag
gatctggccccccatcctctcaccactggctctcaactcatctctgcgccggaaccaaca
gaggaagacatagagaagaaccccgagctgaagaagctgcagatctacggagccggacca
aagatgatgggacttggacttgtagcaagggacaaaggcttcaagaaaaaagatgatctg
cctcagactgttaccatcaaggacgccacacttcctgcttctgacgatgctcctggtgac
gctcccatcaaacctgagcatctcgacccagaagagaagcaaactgatgagggttcatcc
aacctgcagcttcctcctctgactgttacagtcaaaacggaagtaaagaaggaagaagta
aaagcagaatacggagaggatgatggatccaaaatgaccatgaggctcagacgaaacatt
accaaccctcagtgtgtggattcttttatctgtcggatgtgtggccggggagatgatgat
gagaaactcctgcagtgcgacagctgtgatgaaaactatcacacgtattgtctcctaccg
ccgctcaccgatcctccaaaaagcaagtggcgatgcccaaagtgtgtcgctgaagagtgt
aagaaaccgtcggaagcctttggctttgagcaagcaacaagagagtacactttgcagagt
tttggagaaatggccgactcgttcaaagccgattacttcaatatgcctgttcatatggtt
cccactgaactcgtggagagggagttctggaggttagtcagcagtattgaagaagacgtg
actgtcgaatatggagcagacattcactccaaagagttcgggagtggctttcctatgaat
aatgggaagaaggaactcacgaaagaagaggaggagtacgcgcgctctggctggaaccta
aacgtgatgcctgttctggagcagtcgctcctctgccatattaatggggacatctctggg
atgaaggtgccttggctttacgtgggcatggtgttttcaacgttctgctggcacattgag
gatcactggagctactccatcaactacctgcactggggtgaacccaagacttggtatgga
gttccctctgcggcagctgaacagcttgaagatgttatgaagaagctgactccagagcta
tttgagtaccaacccgacctcctgcaccagctcgtcaccatcatgaaccccaatatcctc
atggctcatggggtaccggtggtacgcactaaccagtgtgccggcgagtttgtgatcacc
tttcctagagcctaccacagtggcttcaatcagggatataactttgctgaagcagtcaac
ttctgcactgcagattggctccctgctggtcgacactgtattgagcattaccgccgcctg
aggaggtattgtgtgttttctcacgaggagctcacctgtaaaatggctgcatgtccagag
aaactggaccttaacctggctgcagctacgcatcgggagatgttcatcatcgttcaagag
gagagaaaactgcgcaagaatctgatggaaaggggcatcacagaagcagagcgagaggct
tttgagctgctgcctgatgatgagagacagtgtgataaatgtaagacgacgtgcttcctc
tccgctctggcctgctccaactgtcccgaacgactcgtgtgtctctatcacactcaggat
ctgtgcaactgccccaccgaaaagctctacctcaggtacagatacaccctagatgagttg
ctggccatgctccatcgattaaaggttaggtcggagtcctttgattcgtgggccaacaga
gtaaaagaggcacttgaacaggaggaaggacacaaaatagaaattcttgacttggagaag
ttgaagacggaagcagcagagaaacggtttcccgacaacgagcttctcaggaaactcaac
gctgttttcaaagacatcgcgttctgccatcagaagagtgccgagctcctcagcaacaca
aagactggtgatgataggatgactttggctgagctgaagtccctggttgagaaaatgcaa
aacctaccatgtgtgattaaacacttaaaggaagtgcaggtggttttgcaaacagttgag
gatttccgaaaacaggcccaagtcctggtcaacaacaaggactggaggaaagagtcgccg
cctcctgagcagctgcagagtctgctggaggacgggggcaagctgcccgtcgtggtgccc
gagtgtaatttactccagggcctaaaggcgcagggccactggctggaggaggtgaggcgc
acgctgggcacaggaggaggggagaagcacgaggtgacgctggaggtgctgaggaacctc
atggaggcaggctgcaacgtggctcagagcgtatccgtggagacggccatggcggagctt
caggagctgctcaccatcgccgagcgctgggaggagaaggcacagatctgcctggaacag
aggcagaagcatcctctctccaccctggaggcgatcgtgaacgaggctcagcttattccc
gtcaagctgcccaacatcgaggctctgcggggctgcctgacgcgcgcgcaggcctgggtc
acagacctggaggaaatccagaacggggagcattacccatgtctggacgacctggagggc
ctggtggcgattgggagggacttacccgtcttaatggaggagctgaggcagctggagctg
caggtgaccagcgctcactcctggagggacaaggccaccaaaaccttcctgaagaaaagc
agtcagcacagtttactggaggttttgtgtccgtgtgtgaaaaggagagagcggcggact
gagccggagccgctggacgaaactctggacgactctgattctaacactttgggtctctct
gctcaggcgctgagggacccggcagctatcgttttggctttcaaggaaggggagcaccag
gagaaggaggcgttgctgaggctgcagaaactgaacttgtgtaaatctggactcagctcg
gcgagctgtaaggaaaacgggcgctgggacgagaccatggacacggacacgtcttaccgt
tctgaggactctgtgaaggagaccagaaacggcagccgcagcgccaccgctcagtcggtg
tgcgtgtgcgccaggccgccgcgtgcgcctcagctccgctgccatctgtgcaaggactgg
ttccacggcggctgcgtttcgttcccctccctcctgccgccctccagcccacaaagcaac
cgtctctgctggtgggactgggacacccgctttttgtgccctcagtgtcagcggtcgcgc
cgccctcgtttggccaccatcttggcgttgctggtggcgctccagcggttacccgtgcgc
ctgccagaaggagaggctctgcagtgtctgacggagcgagccatcacctggcagggccgg
gccaaggaggcgctggagatgccggagctgcagcgagcgcttcaggagctgcaggaactc
gcagagaaagaggagcagaaggagaaagacgcagaagggaactcggttatcgtcttatca
gactctgagggaggagaaggagaggatggcgttatcgacttaacggaggacagttcaccc
ataaagaagacaaaggaactcgattcttcacaggctgagtgtcaaaatggcatcagcaag
aagtcaaatgttacaggcgtggagtctctgctgcccctgctgcctctgctgaaaggccga
gtggtgacgctgtcccccggcgccagggagcagctggagaagctgcaactggaaggagac
ctgctggaggtcaccttggaccagacgtacaccatccacagagtcctgcaggccgcctca
gaccctcccagagaaactctgcagacgctcattcagatcgagcttgaggagcagaggggg
gcgaggacgagccgcggacgacccaaggacaaaaggaagagaaaggggcaccgaggcagc
agcgcggacgcagcagggcatcaaccccaggacgcctcccagtcgaagaaaacctgccct
ctgaaaaacagcccaactcgtcctcactcaaacgtcgaaatccatccagagattttgtga

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