Xiphophorus hellerii (green swordtail): 116707758
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Entry
116707758 CDS
T07363
Name
(RefSeq) mediator of RNA polymerase II transcription subunit 13-like isoform X1
KO
K15164
mediator of RNA polymerase II transcription subunit 13
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xhe03021
]
116707758
Transcription machinery [BR:
xhe03021
]
Eukaryotic type
RNA polymerase II system
Mediator complex
CDK-module
116707758
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Med13_C
MID_MedPIWI
Med13_N
Motif
Other DBs
NCBI-GeneID:
116707758
NCBI-ProteinID:
XP_032401185
LinkDB
All DBs
Position
18:26881022..26910189
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AA seq
2109 aa
AA seq
DB search
MSSCFVPNGASLEDCHSNIFCLADLTGIKWRRFVWQGPTSSPILFPVTEEDPILCSFSRC
LAADVLSVWRRHHTPGRRELWLFWWGDDPSFAELIHNELSSEENGEWESGLSYECRTLLF
KAIHNLLERCLMNRGFVRIGKWFVKPYQKEEKIINKSEHLSCAFTFFVHGDSNVCTSVEI
AQHQPLQRLGEEHLSLAQQSSSPLQVILSPYGLNGTLTSQAFKMSDHPTQKLIEEWRQFY
PICPNLKEVPEDKMEDADWEDDSLAAVEVLVAGVRMVYPSCLVLLPLSDLPAVVPQGSAN
TPGMQSGAHQGQAAHRDSAMSSVTLTPPTSPEEAHTDYQPAQRWLKMSSGSDCYSSNNTL
HGGKIPRRLSSQMVKTVWQEYNINRAGNKRKFTTLTNGTCEEEPDRSGFWDFVEPTHRPS
CNCSRPKNQKQRSSSTSGHPPSSGQPPQPAAKHKLGEKLEKGEKQQRRPQTPFHHRNSVS
EEQSMEPQTQRLCPRPQEEGSYPSLHHADTAPPKAPSLHAHGPPADLVGSPPPPPLSPRP
CDHVDGELTPSGAKNSSTPIHQAFYPPSMEPCLMPQKGSTEEPQPDSAAYPSNYNETFEP
TVFIGSAINPGEDSTHNPWKYFNLPRKKTSNFLTPQLPVDKIRDDSSGGSETVVSVTELM
CNSSHPLKVSQELVRTYAQRRNSHLGSSAGDGEHGDESDPYAFVDGDDEFSITEKRDKVG
PEKDGNKKQKLDDGGTATSSDDGQGQSSCKPSASTSLIHEKDLVVSLSDLEKMFNSDEDE
QEPGSKRAGAGNDDKTNLKEPKPERLDPLSSSDLMMMYPTPPSLDQNGYSPGNSGTKDGL
ETGAGLALLDSSQLSSHFKIEVEEGFCSPKPSEIKDFSFVYKPETCQSIIGCSMYAPLKT
LPSQCLLPVKLPEDCVYTPSWTMGKMELMPPVSTVSLLTKDSNVPSVEPDYNQPFTPQTN
TPFLPGSAPPSNSGPGILPSPATPRFSVPTPRTPRTPRTPRGPSSVQGSLKYENSDLYSP
ASTPSTCRPLSSVEPATVPSIPEAHSLYVTLILSESVMNLFKDCNFDSCCVCVCNMNIRG
ADVGVYLKDNGEDQYPCTCGFSAVANRRFGQSAGLFLEDELDVVGRGSDAGRDTERRFEE
LRGSLKEKPPDELILLLQDQCTNPLAPMAGVEWPKPSAVAVAAASPSSFLRVEERDCYND
CYMALEHGRQFMDNMSGGKVDETLVKSTSLHQWPKCKSADMSKLYSQDVLRVLLSLQPAL
QDTIQKKGVRSWGVQGPLTWQQFHKMAGRGTYGTDESPEPLPIPTFLVGYEYDFVVLSPF
GLPYWEKLLLDPFGSQRDVGYVVICPENQTLLRGAKTFFKDLSVMYEACQLGQHKPICKS
HPEGVLTVGSPEGRSMTEQPLSDWFLKMAARESNNEAFHKLKLFAQVCRYDLAPDLSELP
LDSSLLSQRNPTKPAPQTSTSSSASSGLQSTNTTSTNSSQPAQVNSTPPPSSSSSSSSGS
QTNGAMASGKPGSYMPFGTGGLQGSTTQNGPQTNSQSAGGLGDGASSQPQVSAETQESTM
ERDKVGKPTDGESHAVSYPPAIVVYIVDPFSYENADKEVHSSTYTVGLLRCFMEMLPFLP
THIRNAVSVQIVPCQYLLQPVHSGDRHIYSQHLKSLAFSVYTQCRRPLPNSTNFKALTGF
GPGLALDMALKNPERPECLRLYTPSFILAPVKDKQTELGETFGEASQKYNVLFVGYCLSH
DQRWLLASCTDQHGELLESCIISIDVPNRARRKKSSARRVGLQKLWEWCVGLVQVTSLPW
RVVIGRLGRMGHGELRDWSILLSRTNLQSLSKRLKETCRMCGISAADTPSILSACLVAME
PQGSFVIMPDSVSTGSVFGRSTTLNMQTSQLSTPQDTSCTHILVFPTSAMVQVNTNTTEP
IDISFNHINPDGSEGMGLFDLFGSDMDPELINILPNSPTTSPGHSPGHHYHHGEAGKGQG
ADRMESHEEALSILQQPMALGYFISTAKAGPLPDWFWSTCPEAQNQCPLFLKASLHLHVS
AVQSDEFLHSKHSHPLDSNHTSDVLRFVLEQYNALSWLTCNPATQDRRSCLPVHFVVLTQ
IYNFIMNML
NT seq
6330 nt
NT seq
+upstream
nt +downstream
nt
atgagttcttgctttgtacctaacggggccagtttggaggactgccactccaacatcttc
tgcctagctgacttgacgggcataaagtggcggcgtttcgtgtggcaggggcccacttcg
tcgcccatccttttcccggtgaccgaggaggaccccatcctgtgcagcttcagccgatgc
ctggcagcggatgtgctgagtgtgtggaggaggcaccacaccccgggtcgcagggagctc
tggctcttctggtggggggatgaccccagtttcgctgagcttatccacaatgagctctcg
agcgaggagaatggcgagtgggagagcggcctgtcctacgagtgccggacgctcctcttc
aaagccattcacaacctgctggagcgctgcctcatgaaccgcggcttcgttcgcatcggc
aagtggttcgtcaagccataccaaaaggaggagaagatcatcaataagagcgagcatctg
tcctgcgccttcactttcttcgtccatggcgacagcaatgtctgcacgagcgtggagatc
gcccaacatcagcctcttcagagacttggcgaggagcatctcagcctcgcccagcagagc
tccagccccctgcaagtcatcctcagcccgtacggcctgaacgggacgctcaccagtcaa
gctttcaagatgtcagatcacccgacgcagaagctcattgaggagtggaggcagttttat
cccatctgccccaatctgaaggaggtgccggaagacaagatggaggatgcagactgggag
gatgactccctggctgctgtggaggtccttgtcgccggagtcaggatggtgtatccctcc
tgcctggtgctgctccccctgtcggacctccccgctgtggtccctcagggctcggccaac
actccgggaatgcagagcggtgctcaccagggtcaggcagctcacagagactcggccatg
tcctcggtcactctgactccgcccacgtcgccagaagaagcccacacagactatcagcct
gcccagagatggctgaagatgtcttcagggtctgattgctacagctctaacaacactctt
cacggcggaaaaatcccccgcaggctttccagccagatggtgaaaaccgtgtggcaggag
tacaacataaaccgagcagggaacaagaggaagtttacaaccttgacgaacggaacctgc
gaggaggagccggacagaagcggattctgggattttgtggaaccgactcacaggccgtcg
tgcaattgctcgaggcctaaaaaccagaagcagcgatccagcagtacctcaggacacccg
ccgtcttcgggccagccgcctcagcctgccgccaagcacaagctgggtgagaagctggag
aagggcgagaagcagcaacggaggccgcagactcccttccaccaccgcaactcggtgagc
gaggagcagtccatggagccgcagacccagagactttgcccgaggccgcaggaggagggc
tcgtaccccagcttgcaccatgcggacacggcgccgcccaaagccccctccctgcacgcg
cacggccctcccgcggaccttgttggctcgccgccgccccctcctctcagcccgcgtccc
tgcgaccacgtcgatggtgagctgacgccaagcggcgccaagaattcctctacgcccatc
caccaggcgttctacccgccttccatggagccctgcctgatgcctcagaagggctcgacg
gaggagccgcagccggacagcgcggcctatccctcaaactacaacgagacctttgagccc
acggtgtttattggttcggcgataaatcccggagaagactccactcacaacccctggaag
tacttcaacctgcccaggaagaaaacctccaacttcttgacgccgcagttacccgtagat
aaaatacgggatgattcgtcaggaggttcggaaacggtggtgtccgtcacagagctgatg
tgcaactcctcgcatcccctcaaagtgtcgcaggagctggtcaggacctacgctcagcgg
aggaacagccatctcggctcctccgcgggcgacggagagcacggcgacgagtccgaccca
tacgccttcgtagacggagacgacgagttcagcattacggagaagagggacaaggtcgga
cctgagaaggacggcaacaagaagcagaagttggacgatggaggaacggcgacttcttca
gatgacggtcagggccagtcgagctgcaaaccttcagcctcgaccagcctcattcacgag
aaggacttggtcgtgtccctcagcgacctagaaaaaatgtttaactctgacgaagatgag
caagagcctggatccaaaagagccggagccggtaacgacgacaagaccaaccttaaagaa
cccaaaccagaacgcctggatcccttgtcgtcgtcagacctgatgatgatgtatcccacc
ccaccctctctggatcaaaacggctactcccccgggaactccgggaccaaggacggcctg
gagacgggggccggtctcgccctgctggacagcagccagctcagcagccacttcaagatc
gaggtggaggaggggttctgcagccccaagccgtctgagataaaggatttttccttcgtc
tacaagccagagacgtgtcagtctatcatcggttgttccatgtacgcccccttgaagacg
ctacccagccagtgtctgctgcctgtgaaactgccagaggactgtgtgtacacgccgagc
tggaccatgggaaaaatggagctgatgcccccagtgtcgactgtcagccttctcaccaaa
gacagtaacgtccccagcgtggagccggactacaaccagcccttcacccctcagaccaac
acgcctttcctgcccggcagcgccccgcccagcaacagcggccccggcatcctgccgtct
ccggccacgccgcgcttctccgtgcccaccccgcgcacgccgcgcaccccccgcacgccg
cgcgggccctccagcgtccagggctcgctcaagtacgagaactctgacctctactcgccg
gcgtccacgccctccacctgccggccgctcagctccgtggagccggccaccgtgccctcc
atccccgaggcccacagcctctacgtcacgctcatcctctccgagtcggtcatgaacctc
ttcaaggactgcaacttcgacagctgctgcgtgtgcgtctgcaacatgaacatccgcggc
gccgacgttggcgtctatctcaaggacaacggcgaggaccagtacccgtgcacctgcggc
ttcagcgccgtggccaaccgccgcttcggccagtcggcggggctcttcctggaggacgag
ctggacgtggtggggcgcggctcggacgccggccgcgacacggagcgccgcttcgaggag
ctgaggggcagtctgaaggagaagccgccagatgagctgattctgctgctgcaggaccag
tgcaccaacccgctggcacccatggcgggcgtggagtggcccaagccgagcgccgtcgca
gtcgccgccgcctcccccagctccttcctcagagtggaagagagggactgctacaacgac
tgctacatggcgctggagcacggccggcagttcatggacaacatgtcgggaggcaaagtg
gacgaaacgctggtgaaaagcaccagccttcatcagtggccaaaatgcaaatctgcagac
atgagtaagctgtactctcaggacgtcttgcgggtgctgctgtccctgcagcccgcgctt
caggacaccatccagaagaagggcgtgcgctcgtggggcgttcagggaccgctcacctgg
cagcagttccacaaaatggcagggagaggcacgtacggtacagacgagtctcccgagcct
ctgcccatcccgacctttctggtcggttatgagtacgattttgtggtgctgtctcctttc
gggttgccctactgggagaagctgctgctggatcctttcggctcccagagggacgtggga
tatgtggtcatctgcccagaaaaccagacgttgctccgtggagccaagacctttttcaaa
gacctgagcgtcatgtatgaggcatgccagctgggacaacacaaacccatctgcaagagc
cacccagagggggtcctgaccgtcggctccccagaaggaaggagcatgacggagcaaccc
ctcagtgactggttcctcaagatggctgccagggaatcaaataatgaagcctttcataag
ctcaaactctttgcgcaagtgtgtcgctatgatttagctccagacttgtctgagctgccg
ttggacagctccctcttgtcccagcgtaatcccaccaagcccgccccgcagacctccacc
tcttccagcgcctcctcaggactccagagcaccaacactaccagcaccaactcttcccag
cctgcacaggtcaacagcacccctcccccctcgtcgtcgtcgtcttcatcatcgggctct
caaactaacggagcgatggcctcgggcaagccgggttcctacatgccgtttgggacgggc
ggcctgcagggcagcactactcagaacggaccgcagacaaactcgcaaagcgctggcggt
ctcggtgacggcgcatccagccagcctcaggtctccgcggagacgcaggagagcacaatg
gagagggacaaagtgggcaagccgacagacggagagtcccacgccgtctcgtacccgcct
gccatcgtggtctacatcgtcgaccccttcagctacgagaacgcggacaaagaggtccac
tccagcacttacactgtgggcctgctgcgctgcttcatggagatgctccccttcctgccg
actcacatcagaaacgccgtctccgtgcagattgttccctgccagtacctgctgcagccg
gtgcacagcggcgaccgccacatctacagccagcacctcaagtcgttggccttctccgtg
tacacccagtgtcgccggccgctgccgaactccaccaacttcaaggccttgacgggcttc
gggcccggcctcgctcttgacatggccctcaagaacccggagcgaccggagtgtctccgt
ctgtacacgccgtccttcattttggccccggtgaaagacaagcagactgaactcggggag
acgtttggtgaggcgtcgcagaagtacaacgtgctttttgtcggctactgcctgtcccac
gaccagcgctggctgctggcgtcctgcaccgaccagcacggcgagctgctggagtcctgc
attatcagtattgatgttcccaacagggctcgcaggaaaaagagctctgccagacgagtg
ggcctgcagaagctgtgggagtggtgtgtcggcctggtccaggtgacatcactaccgtgg
agggtggtgattggacggcttggcaggatgggccacggcgagctgagagactggagcatt
ctgctgagtcggacaaacctgcagtctctcagcaagcgtctgaaggagacgtgtaggatg
tgcggcatctccgctgccgacacgcccagcatcctgagcgcctgtctggtcgccatggag
ccacaggggtcctttgtgatcatgccagactccgtgtcgaccggctcggtgttcggtcgc
agcaccaccctcaacatgcagacgtcccagctgagcacgccgcaggacacgtcctgcacg
cacatcctggtgttccccacgtcggccatggtgcaggtcaacaccaacaccacggagccc
atcgacatcagcttcaaccacatcaaccccgacggatccgaggggatgggactctttgac
ttgtttggcagcgacatggatccagagctcatcaacatcctgcccaactccccgacgacc
tcgcccggccactctccgggacaccactaccaccacggagaagcgggcaagggtcagggt
gcggatcggatggagtcccacgaggaggctctcagcatcctgcagcagcccatggctctg
ggttacttcatctccacggcgaaggcggggccgctgcccgactggttctggtccacctgt
cccgaagcccagaatcagtgtccgctcttcctcaaggcatctctgcacctgcacgtctct
gctgtccaatcagacgagttcctgcacagcaaacactcccaccctctggactctaaccac
acctccgacgtgctcagatttgtcctggagcagtacaacgccctctcctggctgacgtgc
aaccccgccacccaggaccgacgctcgtgtctgcccgttcacttcgtggtgctcacacag
atctacaacttcatcatgaacatgctctga
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