Xiphophorus hellerii (green swordtail): 116708100
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Entry
116708100 CDS
T07363
Symbol
rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03030
DNA replication
xhe03420
Nucleotide excision repair
xhe03430
Mismatch repair
xhe03440
Homologous recombination
xhe03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
116708100 (rpa1)
03420 Nucleotide excision repair
116708100 (rpa1)
03430 Mismatch repair
116708100 (rpa1)
03440 Homologous recombination
116708100 (rpa1)
03460 Fanconi anemia pathway
116708100 (rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xhe03000
]
116708100 (rpa1)
03032 DNA replication proteins [BR:
xhe03032
]
116708100 (rpa1)
03400 DNA repair and recombination proteins [BR:
xhe03400
]
116708100 (rpa1)
Transcription factors [BR:
xhe03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
116708100 (rpa1)
DNA replication proteins [BR:
xhe03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
116708100 (rpa1)
DNA repair and recombination proteins [BR:
xhe03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
116708100 (rpa1)
MMR (mismatch excision repair)
116708100 (rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
116708100 (rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Pox_vIL-18BP
CATSPERD-E_C
Motif
Other DBs
NCBI-GeneID:
116708100
NCBI-ProteinID:
XP_032401771
LinkDB
All DBs
Position
18:complement(29132157..29159510)
Genome browser
AA seq
600 aa
AA seq
DB search
MASLSTGAIEALANGSGWSEAVLQLLNIRKIDGGSGPSRFRVMMSDGRHTLSSFMLSTQL
NYMAEENLLVPNCVCVLKRQVTNVLKDGRRVVIILEIDVIKPADASDKIGDPIPYSDGQS
KGPQPAPVPESRPPLQPQNRNEGVDRNLKRNFANKIPSALPDTPGGSSKIVPIASLNPYQ
SKWTIRGRVTNKSSVRTWSNARGEGKLFSMEIVDESGEIRVTCFNQEVDKFFSLIEVGKV
YYVSKGSLKIANKQYTSVKNDYEMTLNGESTVIPCEDSCDVPMMQCDFVSIGDLENREKD
AVVDVIGVCKSVDELTRLTTKANREVSKRALSLMDMSGKLVTVTLWGEEAEKFDGSGQPI
VAIKGAKLSDFGGRSLSASFSSTMMINPDIPEAYKLRGWFDKEGHAMEGQSLTEVRGAGR
SLLENWKSLADVKSEHLGHGDKADYYSCIATIVFLRKENCLYQACPSQDCNKKVVDQQNG
MFRCEKCDKEFPNFKYRLILSANIADHADNQWVTCFQDSAEAILGQNAAYLGQLKDSNES
AFDEIFQQANFNTFIFRNRVKLETYNDESRIKATVMEVKPVDHREYSKRLIMNIRNMGAK
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atggcgagtctatcaacaggcgcgatagaggctttagcaaatggcagcggttggagcgaa
gcagtgcttcagttgctgaacattcgcaagatcgatggcgggagtgggccctctcgcttc
agggtgatgatgagcgatggacgacacacactgtcatccttcatgctctccactcagcta
aactacatggccgaggaaaaccttctggtcccaaactgcgtgtgcgtcctgaagcgccag
gtcacaaatgtgctcaaagatggacgacgagtggtaatcattttagaaattgacgtcatc
aaacctgctgacgcctctgataaaataggagacccaattccttactctgatggccagagc
aaaggcccgcagccagctccagtccctgagagcagaccgcctctgcagccacaaaacaga
aatgaaggtgtagacagaaatttgaagagaaactttgcaaacaagattccttctgctttg
cctgatactccaggaggaagctccaaaattgtccccatcgccagcctcaacccctaccag
tccaagtggacaatccggggccgtgtgaccaataagagctccgttcgtacgtggagcaac
gctcgaggcgaaggaaaactcttctctatggagatcgtagatgaaagtggggagatccgt
gtgacctgcttcaaccaagaagttgacaagttcttctctctcatcgaggtcggcaaggtc
tactacgtctccaagggctctctgaagatcgcaaacaagcagtacacgtcggtgaagaac
gactacgaaatgactctcaacggagagtccaccgtcattccctgtgaggacagctgcgac
gttcccatgatgcagtgcgactttgtctccatcggcgacttggagaacagagagaaagac
gctgtcgttgatgtaattggagtgtgcaagagcgtggatgagctgacccgcctgaccacc
aaggccaaccgcgaagtgtccaagagggcgctgagtttgatggacatgtccgggaagttg
gtgaccgtcaccctgtggggagaggaagcggagaagtttgacggctccggacagccgatc
gtagccataaagggcgccaagctctcggacttcggaggccgctcgctttccgcgtccttc
agcagcaccatgatgatcaacccagacatcccagaggcatacaagctcagaggctggttt
gacaaggaaggacacgccatggagggtcagtccctgacggaagtgagaggtgccggcaga
agtctcttggagaactggaagtccttggctgacgtgaagtcggagcatctgggacacggt
gacaaggctgactactactcctgcatagccaccatcgtgtttctgcgtaaggagaactgc
ctttatcaggcctgcccaagccaggactgcaacaaaaaagtggtggaccagcagaatggc
atgttccgctgcgagaagtgcgataaagagtttcccaacttcaagtaccgcctcattctg
tccgccaacattgcggaccacgccgacaaccagtgggtgacttgcttccaggacagcgct
gaggctatcctgggccagaacgccgcgtacttgggccagctgaaggactcgaacgaatcg
gcattcgacgagatcttccagcaagcgaacttcaatacttttatctttcgcaacagagtg
aagctggaaacgtataacgacgagtcgaggattaaagcgacagtgatggaggtgaagcct
gtcgaccacagagagtacagcaagaggttgatcatgaacatacggaatatgggagccaag
tag
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integrated database retrieval system
