Xiphophorus hellerii (green swordtail): 116708142
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Entry
116708142 CDS
T07363
Symbol
scarf1
Name
(RefSeq) scavenger receptor class F member 1
KO
K24318
scavenger receptor class F member 1
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
116708142 (scarf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xhe04131
]
116708142 (scarf1)
Membrane trafficking [BR:
xhe04131
]
Endocytosis
Phagocytosis
Scavenger receptors
116708142 (scarf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
EGF_TEN
EGF_2
EGF_PEAR1L
EGF_Teneurin
Prominin
Motif
Other DBs
NCBI-GeneID:
116708142
NCBI-ProteinID:
XP_032401845
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All DBs
Position
18:complement(21256699..21264564)
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AA seq
897 aa
AA seq
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MRFLRALSALLCCSLSPAQTLDPGGKNVCKDSRVSPSPVCCTGWRQQGKECTIPVCEGEQ
ACLENEVCIFPGVCRCPPGFYGAQCKTECPLAFWAPDCRQVCPCYPHGRCNPVTGECTCY
PTRWGSLCQNTCKCTVNGHCHRVNGKCICNKGWWSQMCSKPCQCSSGGSVDSSCDPLTGR
CQCHGGHWGMKCQATCNCNQSPCNERTGVCECEAGSWGPSCDRNCNCDLSHSSCDPASGE
CLCHPGYMGASCSRPCEAGYYGSSCTMRCGSCKDKRPCSSTDGACTACEPGLNGTRCDQP
CSTGFYGEGCNDKCPRCWNNEPCEPKTGKCWRCDPGWTGTRCEEPCSDGTYGDACRFLCS
PCFHGNCHHVTGRCICQPGFQGESCNNTCPAPLFGLNCSSLCDCGEGVGCHPVTGACPYS
GRGAVLAGVLVPLFLLFFAVLCCCLCCGGGPADSKNSAAVADGGMLVRMKYHVYSVLANI
GAALPCMSDWSSGLPRVTVSHHDPEVTFNHSFIEPPSSGWVTEGSSFDSDEEEGEALYCV
PPREDIPAVAGGEFQEMSSKCNMFLDPSGFSSEDIASSFNIPRTSSNAKSKRPSVSFAEG
TRFSPKERRGSGQDPGAAPRNKVKTPWGVLMLSALQSQGGTARTGEEGGAEEEEREDGEE
GQATETQESSCEVVEQEVDTSPNLQVPGTSGQRRTMSNTAAHKGTPLLNSESEAGALHKV
TTVYVTVGKAGRPVTKAESSSEGPVQAMLRRLGSLQRQKEQDGGRAKSKAAEGITKPPRR
KLGARAAVWEQGGPSGGEAKPVRRKNASSSASEAPPSEGNTPNRPLSSILKSVPEVAISG
SGLRAEGRAMQGVVAAAGQTECSYLTVGPAGETTQAINNQGGANDEPCYENVLISQQ
NT seq
2694 nt
NT seq
+upstream
nt +downstream
nt
atgaggtttctcagagctctgagcgctttgctctgctgctcgctgtcccctgcacagaca
ctggatcctggtgggaaaaatgtctgcaaagattcaagggtctcccccagtccggtctgt
tgcactggatggcgtcagcagggaaaagagtgcaccatacctgtctgtgaaggtgaacag
gcgtgtcttgagaatgaagtctgtatatttcctggagtgtgtcgctgcccacctggcttc
tatggagctcagtgtaaaacagagtgtccactggcgttttgggccccagactgccgacag
gtgtgtccgtgctaccctcatggccgctgtaatcctgtcaccggcgagtgtacgtgctac
cccacccgctggggttccctttgccagaacacctgcaagtgcactgtcaacggccactgc
caccgtgtcaatggaaaatgcatctgcaacaaaggctggtggtcccagatgtgctccaaa
ccgtgccagtgctccagcggtggctccgtggactccagctgtgacccactaacaggccgc
tgccagtgccacgggggccactggggcatgaaatgccaggccacgtgcaactgtaaccag
tctccgtgtaacgaacggaccggggtgtgtgagtgcgaggcaggctcctgggggcccagc
tgtgacaggaactgtaactgtgacctctcacacagcagctgtgacccggcctctggggag
tgcctctgccacccagggtacatgggtgcttcatgcagccgtccttgtgaagctgggtac
tatggcagcagctgtacaatgagatgtggttcctgtaaagacaagcggccgtgctcgtcc
accgatggtgcctgcactgcctgtgaacccggcctgaatggcacacgatgtgaccagcca
tgctctactggtttctatggagaaggctgcaacgataagtgtccgcggtgctggaacaat
gaaccctgtgaaccaaaaaccgggaaatgttggagatgtgaccctggatggaccggaacc
aggtgtgaggagccctgctcagatgggacatatggggacgcctgccgcttcctgtgcagt
ccctgtttccatggtaactgtcatcatgtgacaggaagatgcatctgtcagccaggtttt
caaggagaaagctgtaacaacacctgtcccgctccgctgtttggcctcaactgttcgtcc
ctctgtgactgtggtgaaggagtcggctgccatcccgtcactggtgcttgcccctacagt
ggtagaggtgctgtgctcgcaggtgtgctggttcccttgttcctgctgttttttgctgta
ctgtgttgctgcctgtgttgcggaggaggtccagctgacagcaaaaacagtgcggctgtg
gctgatggcggcatgttggtcaggatgaaatatcacgtctacagcgtcctggcgaacatc
ggcgctgccctcccctgtatgtcggactggtcctccggcctgcctcgagtcactgtgtct
caccacgacccagaggtgactttcaaccacagcttcattgagcctccctcttctggctgg
gtcaccgaggggtcgtccttcgacagcgacgaagaggagggcgaggctctctactgcgtt
cctccaagagaagacatcccggccgtggcgggtggggagttccaggagatgagctccaag
tgcaatatgttcctggacccgtccgggttcagcagcgaggacatcgcttcgtccttcaac
atccctcgcacctccagcaacgccaagtccaagaggccgtccgtgtcatttgcagaaggg
acgcgctttagtcctaaggagaggcgtgggtccggtcaggaccctggtgctgctccgcgt
aacaaagtgaagaccccctggggggttctgatgctgtccgccctccaaagtcagggaggg
acagctagaactggggaggaaggcggagctgaggaagaggagagggaagatggggaagag
ggtcaagcaacagagacgcaagagtcgagctgtgaggtggtggaacaggaagtagacaca
agcccgaatttacaagtccctgggacgtcagggcaaaggcggaccatgtccaacacagct
gcgcataaaggaaccccgctgctcaactctgagagtgaggcgggggctcttcataaggtt
accacggtgtatgtgacagtcggtaaggccggcaggcctgtgacaaaagcagagtcgagc
tctgaaggaccggtccaggccatgctgcgcagactcggcagcctgcagagacaaaaggag
caggacggcggaagagccaagtcaaaggcagccgaggggatcactaaacccccgaggagg
aagctgggagctcgggccgccgtgtgggagcagggagggccgtcaggaggcgaggctaag
ccagtcaggcggaagaatgcctccagcagcgcttcagaggctcctccatcagaggggaac
acgccaaatcggcccctgtcatccatcctgaagagcgtcccagaggtggccatcagcggg
tcaggtctgagagctgaaggaagagccatgcagggtgtggttgcagctgcagggcaaaca
gagtgcagctatctgaccgtgggaccagcaggagagacgactcaggccatcaacaaccag
ggaggagcaaacgatgaaccctgctatgaaaatgtcttaatctcacaacaataa
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