Xiphophorus hellerii (green swordtail): 116708284
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Entry
116708284 CDS
T07363
Symbol
smc4
Name
(RefSeq) structural maintenance of chromosomes protein 4 isoform X1
KO
K06675
structural maintenance of chromosome 4
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
xhe03036
]
116708284 (smc4)
Chromosome and associated proteins [BR:
xhe03036
]
Eukaryotic type
Chromosome condensation proteins
Condensin I
116708284 (smc4)
Condensin II
116708284 (smc4)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_N
SMC_hinge
AAA_23
AAA_21
AAA_15
AAA_29
WEMBL
HMMR_N
COG3_N
TPR_MLP1_2
ERM_helical
DUF7713
DUF1482
Motif
Other DBs
NCBI-GeneID:
116708284
NCBI-ProteinID:
XP_032402045
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Position
18:complement(25393212..25426357)
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AA seq
1299 aa
AA seq
DB search
MPSKTAKTSTASKREPKRKGLQPRDDSEDELDVPPQETNSNGQEEAPPTTDPSQGEATEA
VDSRSLEEILGSIPPPPPPAMTNEPGAPRLMITHLVNRNFKSYAGEQILGPFHKRFSCII
GPNGSGKSNVIDSMLFVFGYRAQKIRSKKLSVLIHSSDKHKDVQSCTVEVHFQKIIDKEG
DDYEVVPNSKFYVSRTANRDSSSYYHIDGKKATFKEVGTLLRSHGIDLDHNRFLILQGEV
EQIAMMKPKGQTEHDEGMLEYLEDIIGSCRLKEPIQTLSRRIELLNEQRGEKLNRVKLVE
KEKNALEGEKNKAVEFLTLENDIFKHKSQLHQYYVHDLQKRVTDKEQEKLKILEETKELT
EKNAKISEEMEKMNQELQNVEKKKNKINKYIETQKGKFTQLDLQDVEVREKIKHSKSKNK
ALQKQLEKDQKKLEEVRGIPASSEQAISEATAQKEDLEKQKAKEEEKLKVVMESLKEETS
GLQQDKEKKEKELMELSKAVNETRSQMDIAQSELDIYLSRHKTALTQLNAAKQMLQTTSD
TLQERRPAIKDLQVHIPQKEKELKKDQEELEQLLKVDNDTRHVVRELQQKVDEAKSSLSS
NRSRGKVLDALMQLKKSGKIPGIYGRLGDLGAIDEKYDVAVSSCCGALDNIVVDTIDTAQ
KCVTFLKEQNIGVATFIGLDKMKVWEKNMTSIRTPENSPRLFDMVRVNDERVRPAFYFAL
RDTLVAQDMEQATRMAFQKDKRWRVVTLKGQIIEMAGTMTGGGRVMKGRMGSSIGQEVSQ
DELDRMESKLNEKVSKLHGCQERRLQLEESVQRLQPQLREMKNTLEKYTNSMSSLADQET
HLKLQIKELEANVLAAAPDKAKQKQMEKSLEAFKKDFESASSKAGKVENEVKRLHNLIVD
INSHKLKAQQDKLDKINKELDDCSSIITKAKVAIKTADRNLKKCEESIARVRAELEENQK
LMAELTEQLKKLEDEAGEIMKACHEAEATLPEVQEQYQNVSKEIKALQQQEHALQEESLN
VRLTIEQIDAAITKHNGKIKYWQDESTKLSLHTIEGQPAEELRVFAPAELEAISDPNILV
NKISMLESQCSQMKPNLGAIAEYKKKEELYLQRVAQLDEITADRDRFKHAYEDLRKQRLN
EFMTGFNMITNKLKENYQMLTLGGDAELELVDSLDPFSEGIMFSVRPPKKSWKKIFNLSG
GEKTLSSLALVFALHHYKPTPLYFMDEIDAALDFKNVSIVACYIYEQTKNAQFIIISLRN
NMFEIADRLIGIYKTHNTTKSVGINPKTIVFREHDAITA
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
atgccatctaaaacagcaaaaacctccactgcttccaaaagggagccaaaaaggaaaggg
ctgcagcctcgggatgactctgaggacgagttggatgtaccccctcaagaaaccaactcc
aatggccaagaggaggcaccgccgacaactgatccgtctcagggggaagctactgaggcg
gttgatagtcgaagtttggaggagattctcggcagcatccctccacctccgcccccagca
atgaccaatgaaccgggcgctcctcgcctgatgatcacacatttagttaatcgcaacttt
aagtcttatgcaggggagcagattctggggccttttcacaagcgcttttcctgcatcatt
ggtcccaatggaagtggaaagtccaatgtgatagattcaatgctctttgtgtttggatac
agagctcaaaagatcagatcgaaaaagctctcagtgctgattcacagctctgataaacac
aaggatgtgcaaagctgtactgtggaggtgcattttcaaaagattattgataaggaagga
gatgactacgaagtcgtccctaacagcaagttctatgtttccaggactgccaacagagac
agttcctcttactaccatatcgatggcaaaaaggccactttcaaagaagttggcacttta
ctccgcagccacggtattgatctagaccacaacagatttctgatcttgcagggtgaggtg
gagcagattgccatgatgaagcctaagggtcagacggagcatgatgaggggatgctggag
tacttggaggacatcatcggttcatgccgtctcaaagaaccgatccaaactctttctcgc
cgcatcgagctgctcaatgagcaaaggggagaaaagctgaatagagttaagctggtggaa
aaggagaaaaatgctttggagggggaaaagaataaagcagtggagttcctcaccttggag
aacgacatcttcaaacacaagagccagctccaccagtactatgttcatgatctacaaaaa
cgtgtgactgataaagaacaggaaaagctaaagattttggaggaaaccaaggagctcact
gaaaaaaatgcaaagatatcagaagagatggaaaaaatgaaccaagagctccaaaatgtg
gaaaagaaaaaaaataagatcaacaagtatatagagacccagaagggaaagttcacccag
ctggacctgcaggatgttgaagtgcgtgagaagattaaacactcaaagagcaagaacaag
gcactgcagaagcagctggaaaaagaccagaaaaagctggaggaagtgcgaggcatacca
gccagcagtgaacaagccatctctgaagcgacggcccaaaaagaagacctggagaagcag
aaagcgaaagaagaagaaaaactgaaagtagtgatggaaagtctgaaggaagagacgagc
ggcttgcaacaggacaaagagaaaaaagagaaagagctcatggaactcagcaaggccgtc
aacgagacccgctctcaaatggacatcgctcagtccgagctcgacatctaccttagccgc
cacaaaacggctctgactcagctgaacgcggctaagcaaatgctccagacgacctcggac
actctgcaagagcgccggcccgccatcaaagacctgcaggtccatatccctcagaaggaa
aaggagctcaaaaaggaccaggaagagttggaacagctgctgaaggtggataatgacacc
aggcacgtggtgagagaactgcagcaaaaggtggacgaagccaagagctccctgtcctcc
aatcgcagtcgaggaaaagtcttggacgctctgatgcagctcaagaagagcggcaagatc
cctggaatctacggaagattgggagatcttggagccatagatgaaaagtacgatgtggcc
gtttcatcttgctgcggcgctctggacaacatcgtggtggatacgatcgacacggctcag
aaatgcgtcactttcctcaaagagcagaatatcggcgtcgccactttcatcggccttgac
aagatgaaggtctgggagaagaacatgacttccattcgaacgccagaaaacagcccccgc
ctcttcgacatggtgcgagtaaacgatgagagggtcagaccggcgttctacttcgccctg
agggacaccctggtcgctcaagacatggagcaggccaccaggatggcctttcagaaggac
aaacgctggagggtggtcaccctgaaggggcagataattgaaatggcaggaacaatgact
ggaggtggaagagttatgaaaggcaggatggggtcttctattggccaagaggtgtcccag
gacgagctcgaccgtatggagagcaagctgaatgagaaagtgtcaaagctgcacggctgc
caggagagacggctgcagttggaggagagcgtccagcgcctgcagcctcagctcagagag
atgaagaacactctggaaaaatacacaaacagcatgagcagtctggctgaccaggagact
cacttgaaacttcagattaaggagcttgaagccaacgtgctggcagctgccccagacaaa
gccaagcagaaacagatggagaagagcctggaggcattcaagaaagattttgagtcagca
tccagtaaggccggaaaggtggaaaacgaggtgaaaagactccacaacttgattgttgac
atcaacagccacaaactgaaggctcagcaggataagctcgacaagatcaacaaagagcta
gacgactgctcctccatcatcaccaaggccaaagtggccataaagacggctgatcgaaac
ctgaaaaagtgtgaggagagcattgctcgtgtgcgagcagagctggaagagaaccagaag
ttgatggctgagctcacagagcagctgaagaagctagaagatgaggcgggggagatcatg
aaagcctgtcacgaggcagaggccactctgcctgaggtgcaggagcagtatcagaacgtt
tccaaggagatcaaagccctgcagcagcaggagcacgcactgcaagaagagtcgctcaac
gttcggctgaccatcgagcagatagacgccgccatcacaaagcacaacggcaagatcaag
tactggcaggatgagagcaccaagctgtcccttcacaccattgagggccagccagcagag
gaactccgtgtctttgcccctgctgagctggaagccatctcggatccaaacatcctggtg
aacaagatcagcatgctggagagccagtgtagtcaaatgaagcccaatctaggagccatt
gcagagtacaagaagaaggaggagctgtacctgcagcgcgtcgcccagctggacgagatc
acagcggacagagacaggttcaagcacgcctacgaggacctccgtaagcagcggctcaac
gagttcatgaccgggttcaacatgatcaccaacaagctgaaggagaactaccagatgctg
acactaggtggggatgcagagctggagctggtggacagcttggatccgttctctgaggga
atcatgttcagtgttcgtccaccaaagaaaagttggaaaaagatctttaacctgtcagga
ggggagaagaccctcagctctctggctctggtgtttgctctgcatcactacaagcccacc
ccgctgtacttcatggacgagatcgatgccgcgctggacttcaagaacgtctccatcgtt
gcctgttatatttatgaacagacaaagaacgctcagttcatcatcatctccttgaggaac
aacatgtttgagatcgcggatcgtctcatcggcatctataaaacacacaacacaaccaaa
agtgtcggaatcaatcccaaaacaatcgtgttcagggaacacgatgccatcacggcataa
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