KEGG   Xiphophorus hellerii (green swordtail): 116708318
Entry
116708318         CDS       T07363                                 
Symbol
polr2i
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB9 isoform X1
  KO
K03017  DNA-directed RNA polymerase II subunit RPB9
Organism
xhe  Xiphophorus hellerii (green swordtail)
Pathway
xhe03020  RNA polymerase
xhe03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:xhe00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    116708318 (polr2i)
  09124 Replication and repair
   03420 Nucleotide excision repair
    116708318 (polr2i)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:xhe03021]
    116708318 (polr2i)
   03400 DNA repair and recombination proteins [BR:xhe03400]
    116708318 (polr2i)
Transcription machinery [BR:xhe03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     116708318 (polr2i)
DNA repair and recombination proteins [BR:xhe03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      116708318 (polr2i)
SSDB
Motif
Pfam: Zn_ribbon_RPB9 Zn_ribbon_TFIIS Zn_ribbon_recom DZR HVO_2753_ZBP Zn_ribbon_Top1 Zn_Ribbon_1 HVO_0758
Other DBs
NCBI-GeneID: 116708318
NCBI-ProteinID: XP_032402104
LinkDB
Position
18:15870733..15873148
AA seq 134 aa
MDLEGGTYEPGFVGIRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKIT
HEVDELTQIIADVAQDPTLPRTEDHPCPKCGHKEAVFFQSHSMKAEVRIPLKGSLYDLSV
VVPHWMLLTYFELI
NT seq 405 nt   +upstreamnt  +downstreamnt
atggatttagaaggtggaacatacgagccgggatttgttggaatacggttttgtcaagaa
tgtaataacatgttgtaccctaaggaagacaaagagaaccgcatcttgctgtatgcgtgt
agaaactgtgactatcagcaggaggctgacaacagctgcatctatgtcaacaagatcacc
cacgaggttgatgaactgacacaaatcatcgctgatgtagcccaggatccaacgctgccg
agaacagaggatcacccctgtccaaaatgcggtcacaaggaggcagtgttcttccagtct
cacagtatgaaggctgaggtaagaattccccttaaaggaagtctttatgacctttctgta
gttgttcctcattggatgttattgacatattttgaacttatttga

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