Xiphophorus hellerii (green swordtail): 116708922
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Entry
116708922 CDS
T07363
Name
(RefSeq) syntaxin-binding protein 5-like isoform X1
KO
K08518
syntaxin-binding protein 5
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xhe04131
]
116708922
Membrane trafficking [BR:
xhe04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
116708922
SNARE
VAMP, Ykt6, Sec22 (R)
Tomosyn
116708922
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LLGL
WDR55
Beta-prop_EML_2
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_RIG_2nd
Beta-prop_HPS5
WD40
WD40_Prp19
ANAPC4_WD40
Beta-prop_IFT140_1st
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Lgl_C
Beta-prop_WDR19_1st
Beta-prop_NUP159_NUP214
EIF3I
Synaptobrevin
Beta-prop_VPS8
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
116708922
NCBI-ProteinID:
XP_032402956
LinkDB
All DBs
Position
19:21410005..21451104
Genome browser
AA seq
1197 aa
AA seq
DB search
MKKFNIRKVLDGLTAASSSSSTTAQPGTPRENDVVQETLQSEHFQLCKTVRHGFPYQPSS
MAFDPVQKILAVGTQTGALRLFGRAGVECYCQHESGAAVIQLQFLINEGALVSALADDSI
HLWNLRQKIPAILHSLKFNRERITYCHLPFQSKWLYIGSERGNIHIVNVESFTLSGYVIM
WNKAIELSTKTHPGPVVHISDNPMDEGKLLIGFECGVVVLWDLKSKKADYRYNYDEAIHS
VAWHHEGKQFVCSHSDGTLTTWNIRAPAKPAQIITPHGKQPKDGKKPEPCKPILKVEYKT
TRAGDPFMVLSGGLSYDTVGRRACLTVMHGKSTAVLEMDYPIVDFITLCETPYPNDFQEP
YAVVVLLEKDLVVIDLGQIGYPIFESPYPLSIHESPVTCCEYFADCPSELIPALYSVGSR
QKRQGYSKKEWPISGGNWGQGTQTYPEIIITGHADGSIKFWDASALMLQVLYKLKTAKVF
ERARGKEEKPSTDIVDEDPFAIQTLFWCPESRMLCVAGVSAHVIIYRFSKQEATTEVVQL
LEVRMQCEFSEADSPDPGGEQTPTLPTSAASSSPQEAEPPNQLTAGVNSSEGARDNIPCL
QVRSSPLKQSPGYQVELVVQLVWVSGEPPQQITSLAVNSSFGLVVFGNSNGLAVVDYVQK
TLLLNLGTSELYSPSDPCQRQPRSPRKPRQPSGGFCDSNDGSNNSEDRCKSPTSGSTSPY
NSDDERKQNFIEKVKLKSRRFSKTVANDFAKMSRKISSSGEQKLDLDVSAPDAEDRSHRW
SPWLCKWPVGSMKNGKLAARMTRKLNVHRTKSDPHRYGKDNAFTRSRSSSVTSIDRESRE
AISSFYFCESFPRKSGSLASPCLLVGTTQGSVMMVALSLQPGGDQKLQQPLSFASCGTLV
HLKGGILTMALLDAAGTMLPPSCEAWYDPNASDEEKEKEKTRRRRPATPPSSQEGQDSQF
AVLCSEKQANVVAMPSQTSIYKHNITETSFVLRADVVQMAGAYCIACFCANGHIMTLSLP
SLRPLLDINYLPLTDMRIARTFCFSNLGQALYLTSPTEIQRITYSQETCDNLQEMLSELF
TPVETPEAPNRGFFKGLFGGGAQSLDREDLFGETAAGKASRSLAQHIPGPGSMEGMKGAA
SGVVGDLARARVALDERGQKLGELEERTAAMMASAESFSKHAHDMMVKYKDKKWYQL
NT seq
3594 nt
NT seq
+upstream
nt +downstream
nt
atgaagaagtttaacataaggaaggtgctggacggcttgacagcggcgtcttcttcctcc
tccacaactgctcagccgggtactcccagggaaaacgatgttgtccaggagactctccag
tcggaacattttcagctgtgcaagaccgtgcgtcatggctttccatatcaaccgtcctcg
atggcttttgaccccgtgcagaaaatcctggccgtcgggactcagaccggagctttgagg
ctgttcggccgtgccggtgtggagtgctactgtcagcatgagagcggggctgctgtcatc
cagctccagttcctcatcaatgagggggcgctggtgagtgccttagctgatgacagcatc
catctgtggaacctgaggcaaaaaattccagctatcctgcattctctcaagttcaaccgg
gagagaatcacatactgccacctgcccttccagagcaaatggctgtacatcggctcagag
cgaggaaacatccacatcgtcaacgtggagtccttcaccctctcaggctatgtcatcatg
tggaacaaagccatcgaattatccaccaagacgcacccagggcctgttgtgcacattagt
gataaccccatggacgagggcaagcttctgattggatttgagtgtggggtcgtggtgttg
tgggatttgaagtccaagaaggctgactaccgctacaattatgatgaggcgatccactcg
gttgcttggcaccacgaggggaaacagtttgtctgcagccactccgatggcactctgacc
acgtggaatatacgcgccccggccaagcctgcacagatcatcacgccacatggaaagcag
cctaaggatggaaaaaagccagagccgtgcaagcctattctaaaagtggagtacaaaact
acaagagctggggacccgttcatggttctgtccggagggctgtcgtacgacacagtgggg
aggagagcctgtttgaccgtgatgcacgggaagagcactgccgtcctggagatggactat
cccattgtagatttcataacgctctgcgaaactccatatccaaatgactttcaggagcct
tacgctgtggtggtcctcctcgagaaggatttagttgtaatagatcttggacaaattggg
tatccgatatttgagagcccctaccctctctccatccacgagtcaccggtgacgtgttgc
gagtattttgccgactgcccctctgaactcattcctgcactttactctgtcggcagccgg
caaaagcgacaaggctacagcaagaaggaatggcccattagtggtggaaactggggccaa
ggcacacagacttacccagagattatcatcacagggcatgccgatgggtcaatcaaattt
tgggatgcttctgcattaatgcttcaagtgctgtacaagctgaagactgccaaggtgttc
gagagggcccggggtaaggaggagaagccgagcaccgacatcgtggacgaagacccgttt
gccatccagaccttgttctggtgtccggagagcaggatgctgtgcgtggctggagtttct
gctcacgtcatcatctacaggttcagcaaacaggaagccaccactgaagttgttcagctg
ctggaggttcggatgcagtgcgagttcagcgaggccgactcccccgatccggggggagag
cagacccccaccctgccgacctccgcagcttcctccagccctcaggaggccgagcccccg
aaccagctcactgcaggtgtcaactcctccgaaggagccagagacaatataccatgcctt
caggtgcggagctccccgctgaagcagtctccgggctaccaggtggagctggtggtccag
ctggtgtgggtgagcggggagccgcctcagcagatcaccagcctggcagtcaactcctcc
ttcggcctcgtggtgttcgggaacagcaatggtctggcagtggtggactacgtccagaag
accctgctgctcaacctgggcacctcggagctgtacagcccgtcggacccctgccagagg
cagccccgctccccgcggaaaccacgccagccttctggaggattttgcgactccaacgac
gggtctaacaactcagaggaccgatgcaaatcacccacgtcaggatctacctcaccctac
aattcagacgatgaacgaaaacagaacttcatagagaaggtgaagttaaaaagcagacgc
ttttccaagacggttgccaatgactttgccaagatgtcgcggaaaattagctcgtctggt
gagcaaaagctagatctggatgtgtctgccccggacgcagaggatcgctcccaccggtgg
tccccttggttgtgtaaatggcccgttggtagtatgaaaaatggcaagctggcggccagg
atgacccggaagttgaatgtgcatagaactaagtcagacccgcaccgatatgggaaggat
aacgcattcacccgctcgcgtagctcaagcgtaaccagcatagacagagaatctcgagag
gccatctcctccttttacttctgcgagagtttccccaggaagtcgggcagcctggccagc
ccctgtctgctggtggggaccacgcagggctccgtgatgatggtggccctcagcctgcag
ccgggcggcgaccagaagctccagcagccactcagctttgcctcctgcggcaccttggtc
catctcaaaggaggcatcctgaccatggccctgctggatgctgctggaactatgctgccc
ccttcctgtgaagcgtggtacgaccccaacgcctccgacgaagagaaagagaaagagaag
acccggaggcgcaggccggccacgcctccgtcctcacaggaaggccaggactcccagttt
gccgtgctgtgttcggagaagcaggccaacgtggtggccatgccgtcccaaaccagcatc
tacaaacacaacatcacagagacctcgtttgtgctgcgcgccgacgtggtgcagatggcc
ggggcttactgcatcgcctgtttctgtgccaacggccacattatgaccctgagcttgccc
agtctgcggcctctgctggacatcaactacttgccgctgacagatatgcggatagccaga
acgttttgcttctctaacttgggccaggctctgtacctgacctcccccaccgagatccag
aggatcacctacagccaggagacgtgcgacaaccttcaggaaatgctcagcgagttattt
acccccgtggagacgccggaggctccgaacagaggctttttcaaaggcctttttggtgga
ggagctcagtctttggacagggaagacctcttcggtgaaacggcggccggtaaggcctcg
cgcagcctggcccagcacatcccgggcccgggcagcatggagggcatgaagggcgcggcg
tccggggtggtgggcgacctcgcccgtgcccgggtggcgctggacgagagagggcagaaa
ctgggagagctggaggagaggacggcagccatgatggccagcgcggagtccttctcgaaa
cacgcccacgacatgatggtgaagtacaaagataaaaagtggtaccagctctga
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