KEGG   Xiphophorus hellerii (green swordtail): 116708972
Entry
116708972         CDS       T07363                                 
Name
(RefSeq) probable histone deacetylase 1-B
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
xhe  Xiphophorus hellerii (green swordtail)
Pathway
xhe03082  ATP-dependent chromatin remodeling
xhe03083  Polycomb repressive complex
xhe04110  Cell cycle
xhe04330  Notch signaling pathway
xhe04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:xhe00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    116708972
   03083 Polycomb repressive complex
    116708972
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    116708972
   04350 TGF-beta signaling pathway
    116708972
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    116708972
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:xhe03036]
    116708972
Enzymes [BR:xhe01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     116708972
Chromosome and associated proteins [BR:xhe03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     116708972
   HDAC complexes
    Sin3A-HDAC complex
     116708972
    BRAF-HDAC complex
     116708972
    REST complex
     116708972
    SHIP complex
     116708972
    MiDAC complex
     116708972
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     116708972
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    116708972
  Chromatin remodeling factors
   NuRD complex
    116708972
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 116708972
NCBI-ProteinID: XP_032403049
LinkDB
Position
19:8680630..8685371
AA seq 488 aa
MAFTSQGTKKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKA
SGEEMTKYHSDDYIRFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSAGGSVA
GAVKLNKQQTDIAINWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHH
GDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEA
IFKPIMAKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEYIKSFNLPLLMLG
GGGYTIRNVARCWTFETAVALDSSIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNDYL
EKIKQRLFENLRMLPHAPGVQMQAIPEDAVQEDSGDEEDDPNKRISIRAHDKRIACEEEF
SDSEDEGEGGRRNAASYKKAKRTKTEGEKETEEKKKSTEETKEVKEEEKVPEEEKMDTSK
PNEEPKTP
NT seq 1467 nt   +upstreamnt  +downstreamnt
atggcatttacctcccaaggcacaaagaaaaaagtttgctactactatgatggtgatgtt
ggaaattactactatggtcagggccatcccatgaagcctcaccgaatccgcatgacccac
aacctgctgctcaactatgggctctacagaaagatggagatctatcgtccacacaaagcc
agtggagaagagatgaccaagtatcacagtgatgattacatcaggttcttgcgctctatc
aggccagacaacatgtcagaatacagcaaacagatgcagagatttaatgtgggtgaggac
tgtccggtcttcgatggtttgttcgagttctgccagctctcagcaggaggctccgtcgcc
ggtgccgtaaagttgaacaaacagcagacagacatcgcgatcaactgggccggagggctt
catcacgccaaaaagtctgaagcctctgggttttgttacgtcaacgacatcgtactggct
atcctggagttactgaaataccatcagagagttctgtatatagatattgacatccaccat
ggagatggtgtggaggaggctttctacaccacagatcgtgtcatgactgtgtccttccac
aagtatggagagtacttcccaggcaccggtgacctcagggatattggtgctggaaagggt
aaatattatgctgtaaattatccactgagggatgggatcgatgatgagtcctatgaagcc
attttcaagcctatcatggcaaaggtgatggagatgtaccagcccagtgctgtggtcctc
cagtgtggagctgactctctgtcaggggacagactgggctgcttcaacctcaccattaaa
ggccatgccaagtgtgtggagtacattaagagcttcaacctgccgctgctgatgctggga
ggaggcggctatacgatccggaacgtggcccgttgctggacgtttgagactgctgtggcc
cttgatagctccatccccaatgagctcccatacaatgactactttgagtactttggacca
gacttcaagttgcacatcagcccctccaatatgaccaatcagaacacaaacgactacctg
gagaagatcaagcagcgcttgtttgagaacctgcgcatgttgcctcacgcccccggagtc
cagatgcaagccatcccagaggacgccgtgcaggaggacagtggcgatgaagaggacgat
ccaaacaaacgcatatctatccgtgctcacgacaaaaggatagcgtgtgaggaagagttc
tcggactcggaggacgaaggcgaaggcggtcgcaggaatgcagccagctacaagaaagcc
aaaaggaccaagaccgaaggagagaaggagacagaggagaagaagaaaagtacagaggaa
acaaaagaagtaaaagaagaagagaaggtaccagaggaggaaaaaatggacacgtcaaag
ccaaatgaggaacccaagacaccttga

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