Xiphophorus hellerii (green swordtail): 116708978
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Entry
116708978 CDS
T07363
Name
(RefSeq) hypoxia-inducible factor 1-alpha-like
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe04137
Mitophagy - animal
xhe04140
Autophagy - animal
xhe04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
116708978
04137 Mitophagy - animal
116708978
04148 Efferocytosis
116708978
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xhe03000
]
116708978
Transcription factors [BR:
xhe03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
116708978
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
PAS_11
HIF-1a_CTAD
HIF-1
PAS
PAS_9
PAS_4
HLH
PAS_2
WASH-7_C
Motif
Other DBs
NCBI-GeneID:
116708978
NCBI-ProteinID:
XP_032403061
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Position
19:complement(5991268..6015486)
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AA seq
758 aa
AA seq
DB search
MDTAIIPEKKRVSSERRKEKSRDAARCRRGKESEVFYELAKQLPIPHSTSSNLDKASVMR
LTISYLRMQNLLCIDEPVAEETTELDIQLSGSYLKALDGFLVVLSEDGDMIYISENVNKC
LGLAQFDLIGHSVFDFTHPCDQEELREMLVYRSGSKKVKEPSTERSFFLRMKCTLTSRGR
TVNVKSATWKVLHCSGHVRVHSSEQSADGHKEPPVPYLVLICDPIPHPSNIEVPLDTKTF
LSRHTMDMKFTYCDERITELMGYDPEDLLDRSVYEYYHALDSDYLTKTHHHLFAKGQVTT
GQYRMLAKRGGFVWVETQATVIYNNKNSQPQCVVCVNFVLSGIQEEKLILSLEQTQEMKP
VKKEEEEEQKDEVKAEVKKSEAVRADDEEEEETPEQKLHLNFQDLVIKKQEQDCLYNLLK
GHPDALMLLAPAAGDTIISLDFSRPGSESEIHLVKDVPLYNDVMLPSSGDKLPLPLSPLA
PTEPLEPASSSAEEAKPDSFAPALSSKPPNKPSEVDNPLGFSFPMDTEMNSDFKLDLVEK
LFAIDPEPKTPFNTEGMEDSELEMFAPYISMDDDFQLPCLGPDEPLSCGPVKALESCPVL
VTLDVHSHPSSPFSAPESCPASPAPPEPVGTPPPATVAANRVAQPEKEVPLRNLAAQNIQ
RKRKLSELKEIIEQGSLTQEQPEKGKKLKATELGATRTILLLPSDLASRLLGTTSDGGGS
LVSLPQLTSYDCEVNAPLQGRQYLLQGEELLRALDHVI
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atggacacagcgatcatacctgaaaagaaaagggtgagttcggagcgcaggaaggagaaa
tcgagggacgcggcgcgatgccgtcgcgggaaggagtcggaggttttctacgagttggcc
aagcagctgcccatcccccacagcaccagctccaacctggacaaggcctccgtcatgagg
ctgaccatcagctacctgcgcatgcagaatctgctctgcatcgatgagccagtggcagag
gagacgacagaactggacatccagctaagcggctcctacctgaaggccttagacggcttc
ctggtggttctgtctgaagacggagatatgatctacatctcagaaaacgtcaacaagtgc
ctcggcctggcacagtttgacctgattggacacagcgtgtttgacttcacgcatccctgc
gaccaggaggagctgagagagatgctggtctacagaagcggctccaagaaagtcaaggaa
ccgagtacagagcgcagcttctttctgcggatgaaatgcacactgacgagccggggccgc
accgtcaacgtaaagtccgccacatggaaggtgctgcattgttcgggtcacgttcgcgtt
cacagcagcgagcagagcgccgacggccacaaggagccgccggtcccatacctggttctg
atctgcgacccgatccctcacccctccaacatcgaggttcctctggacaccaagaccttc
ctcagccgccacacgatggacatgaagttcacatactgtgacgagaggatcactgagctc
atgggttacgatccagaggacctgctggaccgttctgtgtacgagtactaccacgctctg
gactcagactatctcacaaagactcaccatcacttgtttgcgaagggccaggtcaccaca
ggtcagtaccggatgctggcgaaaagaggcggctttgtgtgggtcgaaactcaggccact
gtcatctacaacaacaagaactcgcagcctcagtgcgtcgtctgcgtcaactttgtgctc
agcgggatccaggaggagaaactgatcctttctttggagcagacacaggagatgaagccg
gtgaagaaagaggaggaggaggagcagaaggatgaagtcaaggctgaagtgaagaagagc
gaagccgtccgagcggacgatgaggaagaggaggagaccccggagcagaagctgcaccta
aacttccaggatctggtgattaagaagcaagagcaggattgtctttacaacctgctgaag
gggcatccagacgccctgatgctgctggcgccggcagccggggacaccatcatctccctg
gacttcagccgccctggctcagagtcagagattcacctggtgaaggacgtccctctctac
aacgacgtgatgctgccctcctcaggcgacaagctgccgctgcctctgtctcctctggcg
cccaccgagccgctggagcccgccagcagctccgctgaggaggcaaaacctgacagcttt
gctccagctctgtcctctaaaccccccaacaaaccctcagaagttgacaatcctctgggc
ttctctttccccatggacacagaaatgaactctgactttaaactggacctggtggagaag
ctgtttgccatcgacccagagcccaaaactcccttcaatacggaggggatggaggactct
gagctggagatgttcgctccgtacatctccatggatgacgacttccagctgccctgcctc
ggccctgacgagcctctgtcttgtggaccagtcaaagccctggagagctgcccggtcctc
gtcacgctggacgtccacagccatcccagctctccgttcagcgcgccggagagttgcccg
gcttctccggctccaccggaacccgtcggcacgccccctcctgccaccgtggcggcaaac
agggtcgcacagccggagaaagaggttcctctcagaaatctggctgctcagaacatccag
cggaaaagaaagctgagcgaactgaaggagatcattgaacagggatctttgacccaagag
cagcctgagaagggcaaaaagctgaaggcgacagagctgggagcaaccaggaccattctt
cttctgccttcagatctggccagccgactgctgggcaccacctcggacggcggcggctcc
ctcgtctcgctgccgcagctcaccagctacgactgcgaggtgaacgcccccttgcagggc
cgccagtacctgctgcagggggaggagcttctgcgcgctctggaccacgtcatctga
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