Xiphophorus hellerii (green swordtail): 116708984
Help
Entry
116708984 CDS
T07363
Symbol
shprh
Name
(RefSeq) E3 ubiquitin-protein ligase SHPRH isoform X1
KO
K15710
E3 ubiquitin-protein ligase SHPRH [EC:5.6.2.-
2.3.2.27
]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xhe04121
]
116708984 (shprh)
Enzymes [BR:
xhe01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
116708984 (shprh)
Ubiquitin system [BR:
xhe04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
116708984 (shprh)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SHPRH_helical-1st
SHPRH_helical-2nd
Linker_histone
Helicase_C
zf-RING_UBOX
zf-C3HC4
PHD
zf-RING_2
zf-C3HC4_2
zf-RING_5
zf-C3HC4_3
TPR_10
TPR_12
LMBR1
Motif
Other DBs
NCBI-GeneID:
116708984
NCBI-ProteinID:
XP_032403067
LinkDB
All DBs
Position
19:complement(21355639..21371714)
Genome browser
AA seq
1658 aa
AA seq
DB search
MSSRRKRAPPVRVDEESKRRLEWNMLEDRKNEAVQQEDQTPSSSSCLSGDPTACTSFLSS
VEDITEEDACGRLVQLSDELPSTSSDSGAASASLALSVVPALKLGHVWKALIGEFSIRPA
WLPSDYEQRSFLAYRTGKQLYLSYSSCDESSGPQWSPEEDGCAVECSLGRIPFEDLDWLQ
KRRVVQLCHQTKEQEVKVGIYLLETGLGKPEFLSEGNARPKKATQIMQKLMEYFYDFIIP
EVVENEEECDTDLERQNVEELYDYVRHQHQTENQDVTYDVQHKVLIPVLRPYQSQAVNWM
LRREKYNISTPKEHSLHFLWREVVTLCGKKLFYNPFTGCLIREFPLAGIEWPGGILADEM
GLGKTVEVLALILFHTRQNLEQEALTLPVGKSVNYFVPPRPLVVKATRCKPEAQPKIKTS
HPAVRVMLLNAIKEMRTGKGASVNAVFTYIRATYGYDLLKNRNHIKKTLAKLINEGFVDR
VKGRGLAGSFKLGKNYKETKKMLSAASKLLFRPAESTPRKTFQRRAKEKAEAALQNSLSD
DQTDLSLASDRRDTKGKEQKQWEENANKKADLEGGVTSTGSAAVSLRLSLGKLESDTQEI
PRADRGEEASGTDSQDETETPTRASVVPFNTADYRFECICGELGIIDYKPRVQCMNCQLW
QHAECVNYKEESLTTTPFYCPHCLVAMKPVSTGATLIISPSSICHQWVEEINRHVRSSSL
RVLVYQGVKKHGFIQPRMLAEQDVVITTYDVLRSELNYVDIPHSNSKDGRRFRNQKRYMA
VPSPLVAVEWWRICLDEAQMVECPTAKAAEMALRLASINRWCVSGTPVQRGLEDLYGLTL
FLGADPYWVKYWWDQLLYRPYRRGNTEPLYNVIAQILWRSAKKDVIDQIQIPPQTEEVHW
LHFSPVEGHFYHRQHEVCSQDALVKLRKISDWSLKLGSLDRRTVNTILYPLLRLRQACCH
PQAVRGEFLPLQKSTMTMEELLKSLQKKCRVECEEAHRQLVCALNGLAGIHIIRGEFVEA
AEMYREVLRSSEEHKGRLKTDSLQRLHATHNLMELLNAKHRGIPPTLRDDRLGEEAEQLR
QHYMTKYDSEVADAHQALQPVLQNIKELKRKVNLNSPWWLEVIQMSTRCSTDEDLVSRVK
NELTSSYKQQANKLSMADKFRDACGLQFLLTTQMQDLMKSQKTVRDAVKSLEGPASKEVI
EEATICHLRPMRLPLNNCVFCKADELFTDYESKLFAHTVKGQMAIFEEMIEDEEGLVDDR
LPTTSRGLWAASEAERTLKAILSFAKAKRMDPELVEEGNMFMELFENWKKEYKVLHEYWM
VLRNHVSAIDELGMATERLRVRLPDEPKPKLLHIIEPHEVEQNRVKLLNDQAVAKSQLQK
KLGQFLYLTNLEKSQDKSTGGLNPEPCPICARPLGQEWAVLTCGHCFCNECIAIIVEQYS
VGSRRRAIKCAICRQTTSHTEISYVFTTQSSSHDQDIPVKGSHSTKVEAVVRTLKQIQMN
DPGAKCLVFSMWQSVLDIIAKALLDNNLEFSQINGIHKFQENLSSFKYSEKINILLLPLH
TGSNGLNIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTFVHRFLIKSTIEERMQAM
LKTAEKSHTSTAMKHSEAAVLTVADLADLFTEDTEPLE
NT seq
4977 nt
NT seq
+upstream
nt +downstream
nt
atgagcagtcgaaggaagagggcccctcctgtgagggtggacgaagaatcaaagaggagg
ctggaatggaacatgctggaggaccggaagaacgaagccgtccagcaagaagaccagact
ccgtcctcctcttcctgtctgtcaggcgaccctaccgcctgcacctcttttctctcctcc
gtagaagacatcaccgaggaggacgcctgcggtcgtttggttcagttgtcagatgaactt
cccagcacgtcctcggacagcggcgccgcctccgcgtctctggcgctctctgtggtgccg
gctttaaagctgggccacgtctggaaggctcttatcggggagttcagcatcaggccggct
tggctgccgtctgactacgagcagagatcttttctggcgtaccggacgggcaagcagctc
tacctcagttacagcagctgtgatgagagctcggggccgcagtggagccctgaggaggac
ggctgtgccgtggagtgcagcctcggcaggatcccattcgaggacctcgactggctgcag
aagaggagggtggtgcaactctgccaccaaaccaaggagcaggaagttaaggtgggaatt
tacctactggaaactgggctggggaagccagagttcctcagcgagggaaacgctcggcca
aagaaagcgactcagataatgcagaagctgatggaatatttctacgatttcatcattcct
gaggtcgtagagaacgaggaggagtgcgacactgatctggagaggcagaacgtggaggaa
ctctacgattacgtgaggcaccagcaccagacggagaaccaggatgtaacatacgatgtc
cagcacaaggttctgattcccgtcctcaggccctatcagagccaggccgtcaactggatg
ctgaggagagagaagtataacatcagtacacctaaagaacactccctgcattttctgtgg
cgagaggttgtgactttatgtggcaagaagttgttctataatccctttaccggctgctta
attcgagaattcccgctggctggaatcgagtggcccggtgggatcctggccgatgagatg
gggctcgggaaaacggtggaggttttggcgcttattctcttccatactcgtcagaatctg
gagcaggaagccctcacgttgcctgtgggaaaatctgtgaattactttgttcctcctcgt
ccgttagtagtgaaagctacacgctgcaagcctgaagctcaaccaaaaatcaaaacatcc
cacccagctgtgcgcgtgatgttgctaaatgcaataaaggagatgcggaccggcaaagga
gcctcggtcaacgctgtgttcacctacatccgggctacttacggctacgacctcctgaag
aaccgcaatcacatcaagaagacgctcgcgaagctgataaacgaaggatttgtcgaccgc
gtaaagggccggggtctggcgggttctttcaagttggggaagaactacaaagaaacaaag
aaaatgttgtccgcagcgtccaagttgctcttcagaccagcagagagcacgccaaggaag
acgtttcagaggcgagcgaaggagaaagccgaggcggctctccagaactccctctcagac
gatcaaacagatctgagcctcgcatcggaccggcgtgacacaaagggaaaagaacaaaag
caatgggaggaaaatgcgaacaagaaagcagacctggaaggtggtgtgacgtcgacgggt
tccgccgcggtatctttacggctttctctgggtaaacttgagtcagacacacaggagatt
cccagagcagacagaggagaagaagcctctgggacagattcacaggatgagacggaaact
cccaccagagcgtccgtagtcccgttcaacaccgccgattaccgctttgagtgcatctgt
ggagagctgggcattattgactacaagccgcgtgtgcagtgtatgaactgtcagctgtgg
cagcacgcagaatgtgtgaactataaggaggagagcctcacaacaacgcccttctactgc
cctcactgcctggtggctatgaaaccagtatccactggtgcgacgctcatcatttcgccc
agctccatctgccaccagtgggtggaggagatcaatcgccacgtcagatcctcctccctg
cgcgtgctggtgtatcagggcgtgaagaaacacgggtttatccagcctcggatgcttgcc
gagcaggacgtggtcatcaccacctacgacgttcttcgctctgagctcaactacgtcgac
atcccccacagcaacagcaaggacggccgacgcttccgcaaccagaagcgctacatggcg
gtccccagccctctggtggccgtggagtggtggcgcatctgtctggacgaggcccagatg
gtcgagtgtcccactgccaaggctgcagaaatggctctgcgtcttgcctccatcaaccgt
tggtgcgtcagcggcactcccgtccaacgaggccttgaagatctgtacggcctgactctt
tttcttggagcggatccatactgggtgaaatactggtgggaccagctgctttatcgcccc
tatcgccgtggaaacacagaacctctgtacaatgtgattgctcagatattgtggcggtcg
gctaaaaaggacgtcatcgatcagattcagatcccccctcagacagaggaggtgcactgg
cttcacttttctcctgttgagggccatttctaccatcgccagcacgaggtctgctcccag
gacgctctggtcaaactcaggaaaatctccgactggagcctgaaactgggcagcctggac
cggcgcaccgtcaacaccatcctgtacccgctgctcaggctgcgccaggcctgctgccat
ccgcaggccgtgaggggggagttcctgcctctgcagaaaagcaccatgacaatggaggag
ctcctcaagtccttgcagaagaaatgtcgagtggagtgtgaagaagctcacagacagctg
gtgtgcgcactcaacggcttggctggaattcacatcatccgaggcgagtttgtggaggct
gcggagatgtatagagaagttctgcgctcatcagaggagcacaaaggccggctgaaaact
gattcgttacagcgacttcatgccactcacaacctaatggagctgctcaatgcaaagcat
cgtgggattcctccaacactcagagatgaccgactcggtgaagaggctgagcagctgcgg
cagcattacatgaccaaatacgactcggaggtggccgacgcccatcaggccctgcagcca
gtgctgcagaacatcaaagagctgaagcgcaaagtgaacttaaactccccctggtggttg
gaagtcattcagatgtcaacccgctgttccaccgacgaagatctggtgtcccgtgtgaag
aatgagctaacttccagctacaagcagcaggccaacaagctctccatggcagacaagttc
cgtgacgcttgtggtctgcagttccttctcaccacacaaatgcaagatctaatgaagtca
caaaagactgtccgggacgcagtgaagagtcttgagggcccggcttctaaggaagtgatt
gaagaggccaccatttgccatcttaggccaatgcgactgccactcaataactgtgtgttt
tgtaaagctgacgagcttttcactgattatgaatccaagttgtttgctcacacagtgaaa
ggccagatggccatcttcgaggagatgatcgaggacgaggaaggcctggtggacgaccgc
ctccccaccaccagtcgcggtctgtgggcggcgagcgaggcggagcgcactctgaaagcc
atcctgtcgttcgccaaagctaagcgcatggacccggagctggtggaggagggcaacatg
ttcatggagctgtttgaaaactggaagaaggagtataaggtgttgcatgagtactggatg
gtgctgcgcaatcacgtgtcggccattgacgagttgggcatggcgactgaacggctgcgt
gttcgtctacctgacgagccgaagcccaaactgctgcacattatagagccacatgaagtg
gagcagaacagggtcaagctcctgaacgaccaagctgtggccaagtctcaactccaaaag
aagcttggacagtttctgtacctaaccaatctggaaaagtcacaggacaagtcaactgga
gggctgaacccagagccatgccccatctgtgctcgtcctctggggcaggagtgggccgtg
ttgacttgcggccactgcttctgtaacgagtgcattgccatcatcgtggagcagtacagc
gtgggctcaaggcggcgagccatcaagtgtgccatttgtagacagaccacttcccacaca
gaaatctcctacgtgttcactacccagtcatccagccacgaccaggacataccagtcaag
ggaagccactctaccaaagtggaggcggttgtgagaactctaaagcagatccagatgaac
gatcccggagccaaatgtctcgtcttttcaatgtggcagagtgtcctggacatcatcgca
aaagccttgttggacaataacctggagttttcacaaatcaacggaattcataagttccag
gagaatcttagttctttcaaatacagtgaaaagatcaatattctcctcctcccactccac
accggctccaatgggctgaatatcatcgaagcaacccatgtgttgctagtcgaaccaatc
ctcaacccagctcacgaactccaggctatagggagggtgcaccggattggccaaacaaag
ccgacatttgtacacagattcctaatcaaatccactattgaggagcgaatgcaagcgatg
ctgaagacagcagaaaagagtcacaccagcacagccatgaagcattcggaggctgccgtt
ctgacggtagctgaccttgccgatctgtttacagaggacactgaacctctggagtga
DBGET
integrated database retrieval system
