Xiphophorus hellerii (green swordtail): 116709173
Help
Entry
116709173 CDS
T07363
Symbol
atrn
Name
(RefSeq) attractin isoform X1
KO
K24332
attractin
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
xhe04091
]
116709173 (atrn)
Lectins [BR:
xhe04091
]
C-Type lectins
Others
116709173 (atrn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_ATRN-LZTR1
Kelch_KLHDC2_KLHL20_DRC7
GBD_ATRN
Kelch_1
Kelch_3
Kelch_5
EGF_LMN_ATRN
PSI
Kelch_4
CUB
Lectin_C
Kelch_2
Kelch_6
EGF_TEN
NANM
EGF_Teneurin
PSI_integrin
EGF_laminin
EGF_2
TMEM100
Motif
Other DBs
NCBI-GeneID:
116709173
NCBI-ProteinID:
XP_032403450
LinkDB
All DBs
Position
19:24821234..24973874
Genome browser
AA seq
1379 aa
AA seq
DB search
MYGATRWACSGSGSGPGRSWLMLTTALLLSAVVLLSGLPGLTEAKECDKPCMNGQCNTAT
GSCVCFPGWVGDQCQHCGGRFRLTGPSGYLTDGPGNYQYKTKCTWLIEGQPNTVLRLRFN
HFATECSWDHLYVYDGDSIYAPLLAAFSGLIVPERYGNETVPEVVSQSGYALLHFFSDAA
YNLTGFNISYRVNTCPNNCSGRGECRVGNSTASVYCECEANWKGEACDIPYCLDDCGYPE
RGRCQGKSCICKAGWQGLDCSVSVPANSSFWSREEHLEPGLARASHKAVVEQGVMWVIGG
YVFNTSDYHMVKAYNLSSKTWLTLDPSVNTVTPRYGHSLALHEGKIYMYGGKIDSTGNVS
SQLWVFHIQNQTWVLLTPRPKDQYAVVGHSAHIVPPAQEWDSPVMLVLFGHCPLYGYISN
VQEYNIVKNTWSVVSTDGALVQGGYGHSSVFDPSTRAIYIHGGYKAFSANKYGLAGDLYK
FDVDKRKWTILRDSGFFRYLHTAVIVSGAMLVFGGNTHNDTSMSHGAKCFSSDFLAYSLA
CDEWTVLPRPDLHHDVNRFGHSAVFSDSIMYVFGGFNSLLLSDILTYTSPSCSAFTSPSS
CSQAWPGIHCVWNGSLGACLPWEGNSSSAEPLQQLQQLPASCNTRSYADNERCEQYTDCY
SCTANTNSCQWCSGQCVSLGSNCTAATGSIVEYDVCPKDNPSYVCNKKTSCKSCSVDQNC
QWDNRNQECISLPENVCGETWHLVGNSCLKFNTTSESYDNAKLACRNHNAVLASLTTQKK
VDFVLKELQIMNVMYKTTMTPWVGLRKINVSYWCWEDMSPFTNTTLQWLPGEPSDAGFCG
YLAEPASSGLKAQSCINPVNGSLCERPANHSAKQCKTPCAMRTTCSECTSGTSECMWCSN
MKQCVDSNAYVASFPFGQCMEWYTMSNCPPENCSGYRTCGQCLDQPGCGWCTDPNNTGKG
QCIEGSYRGPFQTLVPAPSTLPGLPASPQPSLNSSMCPSEAKYNWSFIHCPACQCNGHSQ
CVNESVCEKCEDLTTGRHCESCISGFYGDPTNGGSCQPCKCNGHASMCNPSNGKCFCTTK
GIKGDRCHMCEVESRYQGNPLKGTCYYTLLIDYQFTFSLSQEDDRYYTAINFVATPEEPN
RDLDVFINASKNFNLNITWATSFTAGTQTGEEIPIISRCNIKEFKDSFSNENFDFRNSPN
ITFFVYVSNFTWPIKIQIAFSQHSNFMDLVQFFVTFFSCFLSLLLVAAVVWKIKQSCWAS
RRREQLLREMQQMASRPFATINVALEADEEPPDLIGGNVKSVPKPIALEPCSGNKAAVLS
IFVRLPRGSGGIPPPGQSGLAVASALVDVSQQMCVGYKEKSGGLRSRKQQPSAQPSTCI
NT seq
4140 nt
NT seq
+upstream
nt +downstream
nt
atgtacggggcgacgcggtgggcctgctcgggctccggctctggccccggccggagctgg
ttgatgctcacaaccgcgctgctgctctcggccgtcgtgctgctgtccgggctgccgggt
ctcaccgaggcgaaggaatgcgacaaaccgtgtatgaacggacagtgtaacaccgctacg
ggcagctgtgtgtgtttccccggctgggtcggggaccaatgccagcactgcggagggcga
ttcaggctcacaggaccgtctggttacctgactgatggcccaggaaactatcagtacaaa
accaagtgcacctggcttatcgagggacagccaaacaccgttctgagattacgattcaac
cactttgccactgaatgcagctgggaccatctctacgtttacgacggcgactccatttac
gcgccgctgctcgctgctttcagtgggctgattgttccggagcgatacgggaatgagacg
gttcctgaggtggtgtcccagtccggctacgccctgctgcacttcttcagtgatgcagcc
tacaacctgacaggcttcaatatttcatacagggtcaacacgtgtcccaacaactgctct
ggccgcggcgagtgccgggtgggcaactccaccgcctccgtttactgcgagtgtgaagcc
aactggaagggggaagcctgcgacatcccatactgcctggatgactgcggttaccctgaa
aggggccgctgccagggaaagagctgcatctgcaaagccgggtggcaaggtctggactgc
tccgtctcggttcccgccaactcctcgttttggagccgcgaggagcacctggagcccggc
ctggccagggcgtcccacaaggccgtggtggagcagggcgtcatgtgggtcatcggaggc
tacgtcttcaacacgtccgactaccacatggtcaaagcttacaacctcagcagcaagacc
tggctgacccttgacccctccgtcaacacggtgacccctcgatatggtcactcactggct
ctgcacgaggggaaaatctacatgtacggcggaaagatcgactcaaccggaaatgtgtcg
agtcagctgtgggttttccacatccagaaccagacctgggtcctccttaccccccggccc
aaggaccagtacgctgtggtgggacattcggcccacatagtgccgcccgcgcaagagtgg
gacagtcccgtcatgctggtcctgtttggacactgtcctctttacggttacatcagcaat
gtgcaggagtacaacatcgtgaagaacacgtggagcgtggtgagtacagacggagcgctg
gtccaaggcggctacggccacagcagcgtgtttgaccccagcaccagagccatctacatc
cacggaggctacaaggccttcagtgccaacaagtacgggctggcgggagacttgtacaag
tttgacgtggacaaacggaaatggaccattctgagagacagcggcttcttccgctacctt
cacacggcggtcatagtgagcggcgccatgctggtgtttggaggaaacacgcacaacgac
acatctatgagccacggcgccaagtgcttctcctcggacttcctggcctacagtttggcc
tgcgacgagtggacggtgctgccccgaccggacctccaccatgacgtgaaccgcttcgga
cactccgccgtcttcagtgacagcatcatgtacgtgttcgggggcttcaacagcctgctg
ctgagcgacatcctgacgtacacctcgcccagctgctcagccttcaccagcccgtcgtcc
tgcagccaggcctggcccgggatccactgcgtgtggaacggcagcctgggggcgtgcctg
ccatgggagggcaacagctccagcgccgagccgctgcagcagctgcagcagctcccggcc
tcctgcaacaccagatcatatgccgataacgagaggtgtgagcagtacacagactgctac
agctgcacggccaacacaaacagctgccagtggtgttcgggccagtgtgtgtctctggga
agtaactgtaccgctgcaacgggatccatagtggagtacgatgtttgccccaaagacaac
ccctcatatgtgtgcaataagaaaaccagctgcaagagctgctctgtggaccagaactgc
cagtgggacaatcgcaaccaggagtgtatctcactgccagagaacgtgtgcggcgagacc
tggcacctggtgggcaactcctgcctgaagttcaacacgaccagcgagtcgtacgacaac
gccaagctggcctgcaggaaccacaacgccgtcctggcctccctcaccacgcagaagaag
gtggactttgtcctgaaggagctgcagatcatgaacgtcatgtacaagacaacaatgact
ccctgggtggggctgaggaaaatcaatgtctcctactggtgctgggaggacatgtcgccc
ttcaccaacaccaccctgcagtggctgcccggcgagccgagcgacgccgggttctgcggc
tacctggcggaaccggcctccagcgggctgaaagcgcagtcctgcatcaacccagtgaac
ggcagcctgtgtgagcgacccgcgaaccacagcgccaagcagtgcaagaccccctgtgcc
atgcggaccacctgcagcgagtgcaccagcggcacctcggagtgcatgtggtgcagcaac
atgaagcagtgcgtggactccaacgcctacgtggcctccttcccgttcggccagtgcatg
gagtggtacaccatgagcaactgtccacctgaaaactgttccggctacagaacatgcggc
cagtgtttggaccagcccggttgcggctggtgcacggaccccaacaatacggggaaaggc
cagtgcatcgagggttcctaccgagggcccttccagacgttggtgccggcgccatccacc
ctgcccggtctgcccgccagcccccagccctccctgaactccagcatgtgccccagcgaa
gccaagtataactggtccttcattcattgcccagcctgtcagtgtaatggccacagtcag
tgcgtcaacgagagcgtgtgcgaaaagtgcgaggacctgacaaccggccgacactgcgag
agctgcatctccggtttctacggcgatccgaccaacgggggcagctgccagccctgtaag
tgtaacggccatgccagcatgtgcaaccccagcaacgggaaatgcttctgcaccactaaa
ggcatcaaaggagatcgatgccacatgtgtgaagtggagagccgttaccaaggcaacccc
ctcaaagggacatgctactacacgctcctcatcgactaccagttcaccttcagcctgtcg
caggaggacgaccgctactacaccgccatcaacttcgtggccacacctgaggagccaaac
cgcgatctggacgtgttcataaatgcctccaagaacttcaacctgaacattacctgggcg
accagcttcacagcaggcacccagaccggagaggagattccaatcatctcccggtgtaac
atcaaggaattcaaagacagtttttccaacgagaactttgatttccgcaacagtccgaac
ataacgttcttcgtctacgtcagcaacttcacttggcccattaagatccaaattgctttt
tcccagcacagcaactttatggacctggtgcagttctttgtcacgttcttcagctgcttc
ctgtcgctgctgctggtggccgccgtggtgtggaaaatcaaacagagctgctgggcgtca
cgacgacgagaacaactgctgagggagatgcagcagatggccagtcggccttttgccacc
atcaacgtggctttggaggcggacgaagagccacctgacctgataggaggaaacgttaag
tccgttccaaaacccatcgcccttgagccttgctctggcaacaaagccgccgtgctctcc
atctttgtacggttacccagaggctccggtggcatccctcctccaggacagtctggtctg
gcggtggccagcgcgctggtcgacgtctcccagcagatgtgcgtgggctacaaggagaag
tccgggggtctgaggagccgcaagcagcagccttctgcacagccgtccacttgcatctga
DBGET
integrated database retrieval system
