Xiphophorus hellerii (green swordtail): 116709198
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Entry
116709198 CDS
T07363
Name
(RefSeq) thrombospondin-type laminin G domain and EAR repeat-containing protein-like isoform X1
KO
K24437
thrombospondin-type laminin G domain and EAR repeat-containing protein
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
xhe03037
]
116709198
04990 Domain-containing proteins not elsewhere classified [BR:
xhe04990
]
116709198
Cilium and associated proteins [BR:
xhe03037
]
Other cilia and associated proteins
Stereociliary proteins
116709198
Domain-containing proteins not elsewhere classified [BR:
xhe04990
]
Thrombospondin domain-containing proteins
Other thrombospondin domain-containing proteins
116709198
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
EPTP
Laminin_G_2
T2SSN
Motif
Other DBs
NCBI-GeneID:
116709198
NCBI-ProteinID:
XP_032403503
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Position
19:complement(17738415..17748712)
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AA seq
701 aa
AA seq
DB search
MSMQIFILLLLWASRVTETTTDAWRQCTELLPLDLLSFVLERDTSRVAPGARVKQSAGAR
GVQFLSPDASMSFPASQLLANCDLFPKEFSIVITVKVNRFAPKRDEYVFSLMGRSNVEAV
ALEEKEDEQRLRKKETKSDEKHAGVILGLKLSQNSLHFVFNGHRKAAEHWSFQGIRLTPN
QWHTLVLVIGLHHRKLTVDCNPPLESGPSRAFPSDLNIQASRFHIGSRGRWKGLFSGLMR
QLVLVPNSDASNQLCPSSDPRLAALSVPPLLLDLPVRRRQNERHDTSSEAAGRLSVGVER
PCSELLRGQLWFNPLKKGLYVCDGSVWITVLEDHKRLDYVLEQQVLTTSSETHDVEVFQI
QGIGLMAAMAHRSSASGSAVYLWTNLGFRLYQNISTHGALSWKHFQVGKKAYLVVSNSGT
ETNKSVDKQPESDFSVIYKWSNRRKRFVQFQTLQTYCARDWEAFNINEQTYLAVANHRMG
NNNHTINSVIYKWSRSTKSFEVHQTLITSGAYDWEFFKVGPYHFLVVANAFDGMTTSLDS
VIYVWIDGKFQVFQIIKTFCATDWEMFQIGSRVFLVVANGHRFQGNGPSQYTINSTIYEL
DMSGRMFVRFQDIVTYSAVDWEFFSLGEEYFLVVANSYNGESYSLNSILYRWQGYEGFVP
VHWLPTIGCSDWEFFSSNGESFLIYSSAKAPLSKVFKLKTY
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatgcagatattcatactgctcctcctctgggcttccagggtcacggagacaacg
acagacgcatggagacagtgcacagagttgcttcccttggatcttctgtcttttgttctg
gagagggacacgtccagagtggcccccggggcgcgcgtgaagcagtcggctggggcgagg
ggcgtccagtttctcagccccgatgcgtctatgagcttccccgcttcccagctcttggcg
aactgtgaccttttccccaaagagttttccattgttatcacagtgaaagtgaatcgcttt
gcacccaagcgagacgagtacgtcttctctctgatgggacgaagtaacgtggaggctgtc
gcactggaggagaaagaagacgagcagcgcctgaggaagaaggaaactaagagtgatgag
aaacatgcaggggtcatccttggactaaagttatcccaaaacagcctgcattttgttttc
aacggccatcggaaagcagcagagcactggagctttcaaggcatccgtctaactcccaac
cagtggcacacactggttttagtcatcggccttcaccacaggaagctgacggtggactgt
aacccgccgctggaaagtggtccctccagggctttcccttcagatcttaacatccaggca
tccagattccacattggcagtcggggaagatggaagggcttgttttcaggcctgatgcga
caactggttcttgtgccgaactcagacgcctccaatcaactctgcccgtcttctgacccc
cggcttgcagctttgtcagttccaccgctgctcttagaccttcctgtcaggaggaggcag
aatgagagacatgacacttcctctgaagccgcaggacgactgtcagtgggcgtggagagg
ccatgttctgagttgctgcgaggtcagctgtggtttaatcctctcaaaaagggcctctat
gtctgtgacgggtcagtgtggatcactgtgttggaggaccataaaagactggactacgtt
ttggaacagcaggttcttaccaccagctctgagacacacgatgtagaggtgtttcagata
caaggcattggcctcatggctgctatggcccacagatcctcagcctctggttctgctgtg
tatctctggaccaacttgggtttccggctctaccagaacatcagcactcacggcgctctg
tcttggaagcatttccaagtaggaaagaaggcatatctggtagtgtctaattctgggact
gaaacaaacaagtctgtcgacaaacagcctgaatctgacttttctgtcatttataaatgg
agcaacagaagaaaacggtttgtgcagttccagactctgcagacctactgcgctcgagac
tgggaggctttcaacattaatgaacagacttatcttgctgtggccaatcacagaatggga
aacaacaatcacaccatcaacagcgtgatctacaagtggagcagatcgacaaagtctttt
gaggttcaccagacactgatcacatcgggggcctacgactgggagttcttcaaagttgga
ccgtaccacttcctggtggttgcaaatgctttcgatggcatgaccacttctctggactcg
gtcatctacgtttggatcgatggaaaatttcaagtgttccagataatcaagacattctgc
gccacagactgggaaatgttccagattggcagcagagtatttctggttgtggccaatgga
cacagattccagggtaacggacccagccagtacaccatcaactcaactatctatgagctg
gacatgagtgggaggatgtttgttcgcttccaggatattgttacctacagtgcagtggat
tgggagttcttcagcctcggggaagaatatttcttggttgttgctaactcttataatggg
gaatcctactctctcaacagcattctttacaggtggcagggatatgaaggatttgttccc
gttcattggctcccaaccattgggtgcagtgactgggagtttttcagctctaatggagaa
tcctttctgatctactccagtgccaaagcgcctctctccaaagttttcaagctcaaaacc
tactag
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