Xiphophorus hellerii (green swordtail): 116709274
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Entry
116709274 CDS
T07363
Symbol
srrm1
Name
(RefSeq) serine/arginine repetitive matrix protein 1 isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03013
Nucleocytoplasmic transport
xhe03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
116709274 (srrm1)
03015 mRNA surveillance pathway
116709274 (srrm1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xhe03019
]
116709274 (srrm1)
03041 Spliceosome [BR:
xhe03041
]
116709274 (srrm1)
Messenger RNA biogenesis [BR:
xhe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
116709274 (srrm1)
Spliceosome [BR:
xhe03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
116709274 (srrm1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
116709274
NCBI-ProteinID:
XP_032403583
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Position
19:complement(8623885..8636304)
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AA seq
859 aa
AA seq
DB search
MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLDKKVDMTKVNLEVIKPWITQRVTEIL
GFEDDVVIEFIFNQLEEKHPDSKMMQINLTGFLNGKNAREFMRDLWPLLLSAQENIAGIP
SAFLEQKKEEIRQRQIEQEKLASLKKVDQDKKDKDTRERTRSKSPRRWKTRSPGKRERKR
SPSRSPVRKPSPVVGDSPPPPLMQSNTKTSQQPEEPDTSGTGLPDTVIHEASSTGLIDTV
VESVKADSVAEVKEPSPEKSLKKEERPRSREREKETRRERPHHRSRSRSHSRSRRRRSRS
RSYSPRRRQSPRRRMSPRRRSPPRRGPTGSRHRHRRSPVRRRRSRSASSSGSSSSGSRSP
KKPVKRISTTPPRKQLLRPGASVSPVGKDKRSPSPRARRGRGSASPARSSGVKRKPGGRG
DSPPDFVKARTSEGSESEEDKNEKGATADSVQQRRQYRRQNQQSSSDSGSSSSEDEGPKR
SAPGPGARNGEVRRKRSRTPSPRRRHRDPSPRRRRSPSPGRRRRSPSPPRRRRSPSPPRR
RSPSPPPRRRSLSPRRYSPPIQRRYSPSPLPPQKRKLSSSPMKRFSPGPKRRSSRSPKRR
SSPAQRRRSPPSSSSPPRHRRSPPSARPNRDTRSPVMPARRLSPSPANRGRPVRRSTSPQ
RRFDSSSTSPSAQRRQQSPPHSSKLIRRVSRTPEPRKRISPSPKPIRRASSRSQSLSPQP
AAQKRPAPAPASASPSPSRSASGSPPPPPPAKKATSGSGSQSPSKNSDVDGGGKKKKKKK
EKKHKKDKKHKKHKKHKKEKSSAAVTGDVQESRPAEEDGDSRKESESEVDDTLDDLEKHL
REKALRSMRKAQTSPSEMS
NT seq
2580 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgggatttttccgcggcacgagtgcggagcaagacaaccgtttcagcaacaag
caaaagaaattgctgaagcagctgaaatttgcagaatgtctcgacaagaaggtggacatg
accaaagtgaacctagaagtcatcaaaccatggatcactcaacgtgtgactgagattctg
ggatttgaggatgatgtggtcatagagttcatattcaaccaacttgaagagaagcaccct
gatagcaagatgatgcagatcaacctgacggggttcctgaatgggaagaacgcccgggag
ttcatgagggacctttggcccctgctgctgagcgcgcaggagaacatcgctggcatcccc
tctgcttttctggagcagaagaaagaagaaatccgacagagacagattgaacaggagaag
cttgcttccttgaaaaaggttgaccaggataagaaggacaaggacacaagagaaaggact
cgatcaaagagcccaagaaggtggaagacaaggtctccagggaagcgtgaaaggaagcgt
agtccgtcgcgatccccagtgcgcaaacccagcccagttgttggagactcccctcctcca
cctctgatgcagtccaacactaaaacgtcacagcagcctgaggagccagacacgtcagga
acaggcctgccagataccgttatccacgaagcttcgtctactgggttaattgacacagtt
gtagagtcagttaaagcagactctgtggccgaagtcaaagaaccgtccccagagaaatcc
ctcaaaaaagaggaaagaccgaggtctcgtgaaagagaaaaggaaacgaggagggaaaga
ccccaccaccgctctcgctcacgttctcactctcgttctcgcaggcgacgctccaggtct
agatcttactcccctcgtagaagacaaagtcccagaaggagaatgtctccccgtcggagg
agtccccctagacggggccccaccggctcaaggcacagacaccggcggtctcctgttcgc
aggaggcgttcccgttctgcttcatcttctggtagcagctcctcagggtcacgttcacct
aagaaacctgtgaagagaatatctaccacgccgccccggaaacagctccttcgtcctggc
gcttctgtaagccccgttgggaaggacaaacgctcgccgtctcctcgagccaggagaggc
cggggctccgcttccccggcaagatcatcaggtgtaaagcgaaaacctggaggaagggga
gattctccacctgattttgtaaaggccagaacctctgaggggtctgagtcagaggaggat
aaaaatgaaaaaggggcaacagcagattcggtgcagcagcgacgtcagtatcgcaggcag
aatcaacagtcctcttcagattcaggatcttcctcctcagaagatgaaggacctaagagg
tcagcaccagggccaggcgccagaaacggtgaagtaaggaggaaacgcagccgtacgcct
tcacctcgtaggcgacatagagatccctccccaaggaggagacgttctccatctcctgga
cgcagacgtcgctctccttctccccctcgacgtcgtagatctccctcccctcccagacgc
aggtctccttcccctcctccccgtcgtcgctctctgtcccccagacgatattctccccct
atccagcgccgctacagcccctcacctttgcctccgcagaagaggaagctgtccagttct
ccaatgaagcgcttttctccaggccctaagcgacgctcctccaggtcacctaaacgtaga
agctctcccgctcagcggagacgctcgcctccttcctcttcgtctcccccgagacataga
aggagcccgccgtctgctaggccgaacagggacacccgatcccctgtcatgccagctaga
cgcctctccccctcccccgctaaccgaggtcgccctgttcggcggtccactagtccccag
agacgctttgattcgtccagcacgtccccctccgcccagcgaagacagcagtcccctcca
cacagcagtaagctcatccgtagggtgtctcgtaccccagagccgcgtaaaagaatctcc
cccagtccgaagcctataagaagagcttcgtcccgatcccaatcgctttcccctcaaccg
gcagctcagaaacgtccggccccagctccggcctcggcttccccatcaccttcccgctct
gccagcggttctccacctcctcctcccccggccaaaaaggctaccagtggttctggcagt
cagtctcccagcaagaattcagatgttgatggtggtggaaagaaaaagaagaagaagaag
gaaaagaaacacaagaaagataagaagcacaaaaagcacaagaagcataagaaggagaaa
agcagtgctgctgtgaccggcgacgtccaggagagtcgacctgcagaggaagacggtgat
tcaagaaaggaatcggagagtgaagtcgatgacaccttggacgatctggaaaagcacctc
cgagaaaaggcactgcgctcaatgaggaaggcccagacgtctccttcagagatgtcctga
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