Xiphophorus hellerii (green swordtail): 116709364
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Entry
116709364 CDS
T07363
Symbol
rtf1
Name
(RefSeq) RNA polymerase-associated protein RTF1 homolog isoform X1
KO
K15178
RNA polymerase-associated protein RTF1
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xhe03021
]
116709364 (rtf1)
Transcription machinery [BR:
xhe03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
PAF1 complex
116709364 (rtf1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Plus-3
Motif
Other DBs
NCBI-GeneID:
116709364
NCBI-ProteinID:
XP_032403730
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Position
19:22638970..22651679
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AA seq
679 aa
AA seq
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MVNVKKRKVRNVIDSDSEDSASDDNLDQELLSLAKRKRVDSGEHEEPVNKPAASTDSETS
DSDDEWTVGGTKGKKKVKAGKGSEKKSATKKKVNKATASGSSDGDSSADSSAPEEGEVSD
TESNSSSSSSDSDSSEDEVFKDGYDDDLMGDAEDRARLEQMTEKEREQELFNRIEKREVL
RRRFEIKKKLKTAKKKEKEEKKKKQEEEQEKRKQSQVQDTLVVSMSHNKERRSKRDEKLD
KKSQAMEELKAEREKKKNKTAELLAKREPLKTSEVYSDDEEEEEEDDNKSSVKSDRSSRS
SSFDEDEKEETPPKSQPVSLPEELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNSS
SKPVYRVAEIVDVVETTKVYQLGSTRTNKGLQLRHGADTRVFRLEFVSNQEFTESEFMKW
KEAMIVAGMQVPTLDEITKKEQSIKEAMNYKFNDKDIEDIVKEKDRFRKAPPNYAMKKTQ
LLKDKAMAEENGDGEKVKTIQDELNELEERAEALDRQRTKNISAISYINQRNRSWNIVES
EKALVAEGQNSKNQQMDPFTRRQCKPTMVSNARDPSVHAAILAHLNQKYGSGSGGVDPSS
TEKNKVGPANPKDKDVPKPTTDLSEDLFKVHDFDVKIDLQVPNAEAKSLSVSSNALPVKD
GAPRRSLNLEDYKKRRGLI
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atggtgaatgttaagaagcggaaagttcgaaacgtgattgactctgactcagaagacagt
gctagtgatgacaatttagatcaggagctgttgtccttggcgaagaggaagagggtggac
tcaggcgagcatgaagagcctgtaaacaaaccagcagcgtccacagactccgagacgtcc
gacagcgacgatgagtggaccgtgggcggcaccaagggcaaaaagaaggttaaggcgggg
aaaggctctgaaaagaagagcgccactaaaaagaaggtcaacaaggccacggcgtccggc
agctccgatggagacagctcggcggacagctccgctcccgaggagggcgaggtttcagat
acagaaagcaacagctcgtcctccagctccgactcggactcctccgaagacgaggtgttc
aaggacggctacgacgacgacttgatgggcgacgccgaggaccgggcgcgcctggagcag
atgaccgagaaggagagggagcaggagctgttcaacaggatcgagaagagagaggtgctg
cggagacggttcgaaattaagaagaagctgaagacggcaaagaagaaggagaaagaggag
aagaaaaagaagcaggaggaagagcaagaaaaacggaaacaatctcaggttcaagacact
ctggtggtgtccatgtcacataacaaggaaaggcgatccaaacgcgatgaaaaactggac
aagaagtcccaagccatggaggaactgaaagctgaacgtgagaagaagaaaaacaaaacg
gctgaactgctggctaaacgagagcccctcaagacgagcgaggtctactccgacgacgag
gaggaggaggaggaggacgacaacaaatcgtcggtcaaaagcgaccggagctcacgctcg
tcgtctttcgacgaagacgagaaagaggagacgccgccgaagtcgcagcccgtctccctc
cccgaggagctcaaccgggtccgactgtccagacacaagctggagcgctggtgccacatg
cccttctttgcgaagacggtgaccggctgcttcgtgaggatagggatcgggaacagcagc
agcaaaccggtctacagggttgctgaaatcgtggacgtagtagaaacgacaaaagtttat
caacttggatcaacgcggacaaacaagggattacagttgaggcatggggccgacacgcgg
gttttcagacttgagtttgtatcaaatcaagagttcacagaaagtgaattcatgaaatgg
aaggaggcgatgatagtcgctgggatgcaggtgccaactcttgatgaaatcaccaagaag
gaacagtcaatcaaagaagctatgaattacaagttcaacgataaagacattgaggatatc
gtcaaggagaaggacaggttccggaaagcaccgcctaattatgccatgaagaaaacacag
ctacttaaagacaaggctatggcagaagaaaatggtgacggcgagaaagtaaaaactatc
caggatgagctgaatgagctcgaggagagagctgaagcacttgacagacagaggaccaag
aacatttcagctatcagctacattaaccagaggaacagaagctggaacatcgttgagtct
gagaaagcacttgtggctgaagggcagaattccaaaaaccaacaaatggaccccttcact
cgaaggcagtgcaaacccaccatggtgtcaaatgccagggatccgtcggtccatgcagct
attcttgctcacctgaaccaaaagtatggctcggggtcgggaggtgtagatccctctagc
acagagaagaacaaggtgggcccagcaaaccctaaagacaaagatgtccccaaaccaacc
actgacctctcagaagacttgtttaaagttcacgattttgatgttaagattgacctgcag
gtccctaatgcagaagcgaaatctctctctgtgagctccaacgcgctgccggtgaaggac
ggtgctcctcgccgctccctcaacctggaggactacaagaagaggaggggcctgatctga
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