Xiphophorus hellerii (green swordtail): 116710053
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Entry
116710053 CDS
T07363
Symbol
hcfc1
Name
(RefSeq) host cell factor 1
KO
K14966
host cell factor 1
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03083
Polycomb repressive complex
xhe04980
Cobalamin transport and metabolism
xhe05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
116710053 (hcfc1)
09150 Organismal Systems
09154 Digestive system
04980 Cobalamin transport and metabolism
116710053 (hcfc1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
116710053 (hcfc1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
xhe01009
]
116710053 (hcfc1)
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
xhe03036
]
116710053 (hcfc1)
03029 Mitochondrial biogenesis [BR:
xhe03029
]
116710053 (hcfc1)
Protein phosphatases and associated proteins [BR:
xhe01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
116710053 (hcfc1)
Chromosome and associated proteins [BR:
xhe03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
NSL complex
116710053 (hcfc1)
HMT complexes
COMPASS/SET1 complex
116710053 (hcfc1)
MLL-HCF complex
116710053 (hcfc1)
Polycomb repressive complex (PRC) and associated proteins
PR-DUB complex
116710053 (hcfc1)
Mitochondrial biogenesis [BR:
xhe03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
116710053 (hcfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Kelch_3
Kelch_5
Kelch_4
Kelch_1
Kelch_6
fn3
Motif
Other DBs
NCBI-GeneID:
116710053
NCBI-ProteinID:
XP_032404739
LinkDB
All DBs
Position
20:25217860..25235293
Genome browser
AA seq
1711 aa
AA seq
DB search
MSAPGSAVSGTTPSVLQPRWKRVLGWSGPVPRPRHGHRAVAIKELMVVFGGGNEGIVDEL
HVYNTATNQWFIPAVRGDIPPGCAAYGFVCDGTRLLVFGGMVEYGKYSNDLYELQASRWE
WKKLKAKNPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYTLELR
PGSSVVGWDIPITYGVLPPPRESHTAVVYTEKMTRKSRLIIYGGMSGCRLGDLWTLDIDT
LTWNKPSVGGTAPLPRSLHSATTITNKMYVFGGWVPLVMDDVKVATHEKEWKCTNTLACL
NLDSMCWETVLMDTLEDNIPRARAGHCAVAINSRLYVWSGRDGYRKAWNNQVCCKDLWYL
ETERPHAPARVQLVRANTNSLEVSWGAVSTADTYLLQLQKYDIPATPAVASPATSATPSQ
PVNSPKSPALAAAAPSAQSLQQTAVLKVAAQQAATGASVVTVRPSQPGKSPVTVTSLPPG
VRMVVPTQTTQGSPIGSSPQMSGMAALAAAAAATQKIPPSSGGTVLNVPAGATILKTVAV
SPGTTTVKVASPVMVSNPATRMLKTAAAQVGTATASSPTTTRPIITVHKSGAVTVAQQAQ
VVTTVVGGVTKTITLVKSPLTMGSSGTLISNLGKMMSVVQTKPVQTSAVTGQASTNPLTQ
IIQTKGPLPAGTILKLVTSADGKPTTIITTSQAGVTGNKPTILNISGVSPTTTKQGTTII
KTIPMSAIMTQPGATGVTSSAGMKTPITILTTKVMTTGTPGKIITAVPKLSTAAGQQGLT
QVVLKGAPGQPGTILRTLPMSTVGGVRLVTPVTVSSVKPTVTTLVVKGTTGVTTLGTVTG
TVSTSLAGATADSSSASLVTPITTLANIATLSSQVINTGAITVSAAQTSLTSTSTLPSST
MTVQNQPTQVTLITTPSGVEAQPVQDLPVSILASPTSEQPSSTEAGATGDGSGTVTLVCS
NPPCETHDTGTTNTATTSSATIGAGQVCSNPPCETHETGTTNTATTSSATIGAGQVCSNP
PCETHETGTTNTATTASSNMSTLRMCSNPPCETHETGTTNTATTATSNMGGTQQVCSNPP
CETHVTGTTNTATQASSSMNAGETGTVQSSQSNPPSETHESGTSDSPSASTSSVGEDQSS
TATGQIQRVCSNPPYETHETGTTNTATTATCNMETGEGTAAQQTEEGAEGTSTTEEAATT
AATSVATTTQGRAITTVTQSTPAPGPSVPSISSITEGVSTAASSTEEPMQTEEPASAEAA
PAEEPAAAMETQAEGEAATATALNLPSELMSEAQGTTLMVTGLSDEELAVTAAAEAAAQA
AATEEAQALAIQAVLQAAQQAVMNEGDGSGESQQPTNIPIMLTQQELAALVQQQQQLQEA
QAAAQQASVDTSMPTEGLAPADSLNDPSVESNGHNEMAASVTSAVASLLPRTTAETLAPS
STFAASISVASPAKLQAAATLAEVANGIEGEKQAPQPAPVKPVVKKENQWFDVGIVKVTN
MVVTHFHVPGDDSQGDDDSGAVPDYGQMKKMELQPGTAYKFRVAGINACGRGTFSEISAF
KTCLPGFPGAPCAIKISKSPDGAHLTWEPPSVTSGKIIEYSVYLAIQSSQTAEAKASTPA
QLAFMRVYCGPNPSCLVQSSSLSNAHIDYTTKPAIIFRIAARNEKGYGPATQVRWLQESG
KDATSAKPAPKRPGTSPDTKTTGPKKARTDQ
NT seq
5136 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcccctggttccgcggtgtctgggaccactccgtcggttctgcagccgcgatgg
aagcgggtcctcggatggtccggtccggtccctcggcccaggcacggacacagagctgtg
gctataaaggaactgatggttgtttttggaggtggaaacgaaggaattgttgacgaatta
catgtatacaacacagcgacaaaccagtggtttatcccagcagtccgtggtgatatccct
ccaggttgtgctgcatatggttttgtatgtgatggaacacggttgctggtttttggtggg
atggtggaatatgggaaatacagcaatgatctctatgaactacaggccagcagatgggaa
tggaaaaaactgaaagccaaaaatccaaaaaacggcccaccgccttgtcctcgactcggc
cacagcttttcgctcgttggcaacaaatgctacttgtttggtggactggccaatgatagt
gaagaccccaaaaacaacattccccgatacctaaatgatttgtacacactcgagcttcgt
cctggttctagcgtggtcgggtgggatattccaatcacgtatggcgtcctgcctccgcct
cgtgaaagtcacaccgctgtggtgtacacagaaaagatgaccaggaagtcacgcttgata
atctatggaggaatgagcggttgtcgccttggagatctgtggacgcttgacatagacacc
ctgacttggaacaaaccttcagtaggcggtacggcacctcttccacgaagtcttcactct
gccaccacaatcacaaacaagatgtacgtttttggcggatgggttccattggtaatggat
gacgtcaaagtggccacgcatgagaaagaatggaaatgcacaaacacactcgcttgccta
aatctcgactccatgtgttgggaaacagtgttgatggataccctggaggataacatcccc
agggcccgtgctggccactgtgccgtggccatcaattccagactgtatgtctggagcggt
cgtgacggttatcggaaagcgtggaacaaccaagtgtgctgtaaagacctttggtacctg
gaaacagagcgaccccacgctcccgccagggtccagttagtccgtgccaacacaaactct
ctggaggtgagctggggtgcagtgtccaccgccgacacgtacctgctgcagctgcagaag
tacgacatccccgcgaccccggcagtagcctcgccagccacgagtgcaacgccttcgcaa
cctgtcaactctccaaagagccctgcactggctgctgcagcaccctccgcgcagagttta
caacagacagctgttttaaaggttgcagctcagcaggctgccacaggcgcatctgttgtc
acagttcgcccgagccagccagggaaatcccccgtcaccgtgacgtcccttcctccaggt
gttcgaatggtagtgcctactcaaaccacccaaggatcgccaattggaagcagccctcag
atgagtggcatggcagctttagctgctgcagctgcagccacacagaagatcccaccctct
tcaggaggcaccgttctcaatgttcccgccggtgccaccatcctcaaaacagtggctgtc
tccccaggcaccaccacagtgaaagtggcttctcctgtaatggtcagtaacccagccacc
cgcatgctgaagacggccgcggcccaggtgggcacggcaaccgcgtcctctcccaccacc
accagaccgatcatcactgtgcacaagtccggggctgtcacagtggctcagcaggcccag
gtggtcaccactgtggtgggaggagtcaccaagaccatcaccctggtcaagagtcctctc
accatgggcagcagcggtactttgatctccaaccttggcaagatgatgtctgtggtgcaa
accaagccagtgcagacatcagctgtcacaggccaggcttccactaaccctctcacacag
atcatacagacaaagggtcccctcccagccggtaccatcctgaaactggtgacttctgca
gacggcaagcccacaacaatcatcacaacgtcccaggccggagtcacaggaaacaagccc
acgatcctcaacataagtggcgtctcacctactactaccaagcagggaaccaccatcatt
aaaaccatccccatgtcggccatcatgacccagcctggagccacaggcgtgacgagcagt
gcaggcatgaaaacaccaataacgatccttaccaccaaggtaatgaccactggaacgcct
ggtaaaattattactgctgtgcccaaactgtccactgcagctggacagcagggactgacg
caggtggtattaaagggcgctccaggacagccgggcactattttgcgtaccttgcccatg
agcacagtaggcggtgttcgtctcgttacgccagtgacggtctcctctgttaagcccacg
gttactacgctggttgtcaaaggaactactggagtcaccactcttgggaccgtcactggg
acggtgtccacaagcttggcaggagccacggctgacagctccagtgcctccctggtgacg
ccgatcaccacgctggcgaacatcgctacactgtccagccaggtgatcaacacaggcgcc
atcacggtctcggctgctcagaccagtctgacttctacttcgactctgccctcctctaca
atgacagtgcagaaccagcccacccaggttaccctgatcacaacccccagtggtgttgaa
gcccagccagtccaggatcttcctgtgtccattctggcttctccgacctctgaacagccc
agctccactgaggcaggagcaactggagacggttctggtacagtcaccctggtctgctcc
aacccgccctgcgagacccacgatacaggaactaccaacactgccaccacttcctccgct
acaatcggagccggacaggtctgctccaacccgccctgcgagacccacgagacaggaacc
accaacacggcaacgacttcctctgctacaatcggagccggacaggtctgctccaaccca
ccctgcgagacccacgagactggaaccaccaacacggccacgacggcgtcttcgaacatg
tccacattacgcatgtgctccaacccgccctgcgagacccatgaaacggggacgacaaac
acggccacaacagcgacctccaacatgggagggacccaacaggtgtgttcaaatcccccc
tgcgagacccacgtgacgggcaccaccaacacagcaacacaagcttcctccagcatgaac
gccggcgagacgggcaccgtgcagagctctcaatcaaatccacccagcgaaactcacgaa
tcagggaccagcgacagtccgtccgcatccacctccagcgtaggggaggaccagagcagc
acagcaacgggccagatccagagggtctgctccaacccgccgtatgaaacgcatgagact
gggaccaccaacaccgccactactgctacctgcaacatggagaccggtgaaggcacagcc
gcccagcagacagaggaaggagcagaaggaacaagcaccacagaggaagctgctaccact
gcagctactagcgtagctacaaccacccaaggcagagccatcaccacggtcactcagtcc
acaccggcccctgggccctcagtaccgtcaatttcctcaatcacagaaggagtaagcact
gcagccagcagcacggaggagccgatgcagactgaagaacctgcatcagcagaagctgca
cctgctgaggagcctgctgcagccatggagacacaagcagaaggagaagcagcaactgca
acggccttgaacctgccctcggagctgatgtctgaggcccaggggaccacgctgatggtg
acggggctgtcggacgaagagctggccgtgaccgccgccgccgaggctgctgcccaggct
gcagccacagaggaggcccaggccctcgccatccaggctgtcctgcaggcagcgcagcaa
gccgtaatgaatgaaggcgacggttctggggaaagccagcagcccaccaacatccccatc
atgctgacccagcaggagctagccgcactggttcagcagcagcagcaactacaggaagct
caggccgccgcgcagcaggcctccgtggacaccagcatgcctaccgagggcctcgccccc
gccgacagcctcaacgacccgtcagtcgaaagcaatgggcacaacgaaatggctgcctcg
gtcaccagcgccgtggcatcccttctaccacgtaccactgctgagactctggctccatca
agtacgtttgcggcgtctatatcagtagcaagtccggccaagctgcaggcggcagccact
ctcgcagaggtggccaatggcatcgagggagagaaacaagcccctcagcccgctccagtg
aagcctgttgttaaaaaggagaaccagtggtttgatgtcgggatcgtaaaagtgacgaat
atggtcgtcactcacttccatgtgccaggggatgattctcaaggagatgacgactctggc
gccgtaccggactacggtcagatgaagaagatggagctgcagcccggcacggcgtataag
ttccgcgtggcggggatcaacgcctgcgggcgtggaacgttctctgagatttctgctttc
aagacctgcctacccggattcccaggagccccgtgtgccatcaaaattagcaagagccca
gatggcgcccacctgacctgggagccgccttcggtcacgtcagggaaaatcatagagtac
tctgtgtacctggccatccagagcagccagacggctgaggccaaggcctccaccccggcc
cagctagccttcatgcgagtgtactgcggacccaacccctcgtgcttggtgcagtcgtcc
agcctctcaaacgctcacatcgactacacgactaaaccagccatcatcttccgcatcgcc
gcccgcaacgagaagggctacggtcccgccactcaagttcgatggctacaggaatctggt
aaagacgccacttctgcaaaacctgcccccaaaagacccggcacctctcctgataccaag
actactggtccaaagaaagcaaggacggaccagtga
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integrated database retrieval system
