Xiphophorus hellerii (green swordtail): 116710077
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Entry
116710077 CDS
T07363
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(II) chain-like
KO
K19719
collagen type II alpha
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe04510
Focal adhesion
xhe04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116710077
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
116710077
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
xhe00536
]
116710077
Glycosaminoglycan binding proteins [BR:
xhe00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116710077
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
TILa
Motif
Other DBs
NCBI-GeneID:
116710077
NCBI-ProteinID:
XP_032404770
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All DBs
Position
20:complement(12106087..12159302)
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AA seq
1491 aa
AA seq
DB search
MLSFMDSRTVLLLVASQVCLLAVVRCQLEDDQEDASACRHEGQLYNDKDIWKPEPCRICV
CDTGTVLCDDIVCEELRDCPKPEIPFGECCPICPADQPPPFGGTGAKGQKGEPGDITDVV
GPRGPSGPMGPPGEQGPRGPRGEKGEKGTPGPRGRDGEPGTPGNPGPPGPPGPNGPPGLG
GNFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGSPGPQGFQGSPGEAGEPGQS
GPMGPRGPSGPPGKPGDDGEPGKPGKSGDRGPTGPQGARGFPGTPGLPGIKGHRGYPGLD
GTKGETGAVGAKGEAGAPGESGAPGPMGPRGLPGERGRPGSTGSAGARGNDGLPGPAGPP
GPVGTAGAPGFPGSPGAKGEAGPTGARGPEGAQGSRGESGTPGSSGPSGASGNPGTDGIP
GAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGIAGFKGEAGPKGEIGPA
GPQGALGPQGEEGKRGPRGEPGSAGPLGPPGERGAPGNRGFPGQDGLAGHKGAPGERGPP
GASGAKGATGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGAR
GQSGVMGFPGPKGATGESGKSGEKGLAGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQ
GQPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAAGATGPRGERGFPGERGAAGPQGLQ
GPRGLPGTPGTDGPKGAIGPAGGPGAQGPPGLQGMPGERGAAGIPGPKGDRGDVGEKGPE
GAPGKDGARGLTGPIGPPGPGGPNGEKGESGPAGPSGPAGVRGAPGDRGETGPPGPAGFA
GPPGSDGQPGTKGEQGEAGQKGDAGAPGPQGPSGAPGPAGPTGVSGPKGARGAQGPPGAT
GFPGAAGRVGPPGPNGNPGPAGPAGPPGKDGPKGVRGDGGPQGRQGDAGLRGPAGAPGEK
GDPGEDGPPGPLGPSGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAAGGPGDR
GPPGPVGPPGLTGPAGEPGREGNPGSDGPPGRDGSPGIKGDRGNTGPAGAPGAPGALGAP
GPVGPTGKQGDRGESGAQGPAGPPGPAGARGMPGPQGPRGDKGEAGESGERGQKGHRGFT
GLQGLPGPPGQPGDQGATGPAGPSGQRGPPGPVGPAGKDGSNGLPGPIGPPGPRGRTGDS
GPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGQTEKSPDPLRYMRADQAAGNLRQHDAEVD
ATLKSLNNQIENIRSPEGSKKNPARTCRDLKLCHPDWKSGEYWIDPNQGCTVDAIKVFCN
METGESCVNPKPAKIPRKNWWSSKSKERKHVWFGETMNGGFHFSYGDDSLAPNTASIQMT
FLRLLSTEASQNLTYHCKNSVAYLDASTSNLKKAVLLQGSNDVEIRAEGNSRFTYSVMED
GCTRHTGQWGKTMFEYRSQKTSRLPIVDIAPMDIGGADQEFGIDIGPVCFL
NT seq
4476 nt
NT seq
+upstream
nt +downstream
nt
atgttgagctttatggattccaggactgtactgcttcttgtagcatcccaagtttgtcta
ttagccgttgtgagatgtcaactggaagatgaccaggaggatgcttctgcctgtagacac
gaaggacaactttataacgacaaggacatatggaaaccagagccttgtcgcatctgtgtg
tgtgatacgggaacggttctgtgtgatgacattgtctgcgaggagctaagagactgcccc
aaacctgaaatcccatttggagagtgttgccccatctgccctgctgaccagccaccacct
tttggaggaacaggagccaagggtcagaagggtgaacccggagacattacagatgttgta
ggaccaagaggaccatccggccccatgggcccaccaggagagcaaggaccccgaggacca
agaggagaaaaaggagagaaagggacccctggtcctcgtggcagagatggtgaaccagga
acccctggaaaccctggaccccctgggcctccaggacctaatggtccccctggacttggt
ggaaactttgctgctcagatggccggtggttttgatgagaaggccggaggtgcacagatg
ggggtgatgcaaggaccaatgggccccatgggacccagaggaccacctgggccctcagga
tcacctggcccacaaggtttccaaggcagcccaggagaggctggagagcctggacaatct
ggccccatgggtccccgtggcccctccggtccccctggaaaacccggagatgatggtgaa
ccaggtaaaccaggaaaatcaggtgaccgtggacccaccggacctcagggagctcgtggt
ttcccaggaactcctggtctgccaggcatcaagggacacagaggttatccaggtctcgac
ggtacaaagggagaaactggtgctgttggtgcgaagggtgaggctggtgctcccggggag
agcggcgctcctggacccatgggaccacgtggtttgcctggggagagaggacgtcccgga
tccactggatctgctggtgcacgtggaaacgatggcttgcctggtcctgctggtcctcca
ggccctgttggtacagctggagctccaggcttccccggatctcctggtgcaaagggtgaa
gctggtcctactggcgcccgtggtcctgaaggagctcaaggatcccgtggagagtcaggc
actcctggatcatctggaccctctggtgcttctggtaaccctggcactgacggtatccct
ggagctaaaggctcagcaggtgctccaggtatcgcaggtgctcctggcttccctggacct
cgcgggcctcctggacctcagggagcaactggaccccttgggccaaaaggaacatctgga
gatcccggtatcgccggattcaagggtgaagctggaccaaagggagaaattggaccagct
ggacctcagggagcccttggccctcaaggagaagaaggcaagagaggacccagaggtgag
cctggttctgctggacctcttggacctccaggagaaagaggagctcctggtaaccgtggt
ttccctggtcaggatggtctggctggtcacaagggagccccaggtgagcgcggaccccct
ggggccagcggtgccaagggagccacaggcgaccctggccgtcctggagagcctggtctt
cctggtgcaaggggtctgactggtcgtcctggtgatgctggacctcagggcaaagttggg
ccttctggagctccaggtgaggacggacgtccaggacctcccggccctcagggagccaga
ggacagtctggtgtcatggggttccctggacccaaaggagcaactggtgaatctggcaaa
tctggtgagaaaggactggccggagctcctggtctgagaggtctgcccggaaaagatgga
gaaacgggcgcggctggaccccctggccctgctggccctgctggggagagaggagagcaa
ggacaacctggtccctcaggtttccagggtcttccaggacctcctggccctcccggtgag
ggaggcaaaccgggagaccagggcgtcccaggagaagctggagctgctggtgccactgga
cccagaggagagcgtggttttccaggagagagaggagctgctggaccgcaaggtttgcag
ggacccagaggtctgcctggaactcctggaactgacggacccaagggagccattgggcct
gctggaggtccaggagctcagggtccaccaggtctgcagggtatgccaggagagagagga
gctgctggcattcctggacccaaaggagacagaggtgatgttggagagaaaggacctgaa
ggtgctcccggcaaagatggcgccagaggtcttactggtccaattggtcctcctggtcct
ggtggtccaaatggcgagaagggtgaatctggacctgctggaccatctggacctgctggt
gttcgtggtgcacctggagacagaggagagactggacctcctgggcctgctgggtttgct
ggacctcctggatccgatggtcagcctggaaccaaaggagagcagggagaagctggacag
aagggagatgctggagcccctggaccccaaggaccatccggtgctcctggccctgcgggt
cctacaggtgtttctggacctaaaggtgctcgtggtgcccagggtcctccaggtgccact
ggtttccctggagctgctgggcgagttggacctcctggccccaacggtaatcctggacct
gcaggtcctgctggccctcctggtaaagacggaccaaaaggagtgagaggagacggtgga
cctcagggcagacaaggcgacgctggactacgcggtcctgcaggagctccaggagagaag
ggtgaccctggagaggacggtcctcctggtccactaggtccctcaggtcctcagggattg
gctggtcagcgcggtattgttggtctacccgggcagagaggagaaagaggtttccctggt
ttgcctggaccttctggtgagcctggaaagcagggagctgctggtggtcctggagaccgt
ggaccacctggaccagtcggaccgcctgggctcactggtcctgctggagaacctggtaga
gagggcaaccctggatctgatggacctcctggtagagatggttctcctggaattaagggt
gaccgtggcaacaccggtcctgctggtgctcctggtgctccaggtgctcttggggctccc
ggcccagtcggtcccaccggaaaacagggagacagaggggagtctggtgcccaaggacca
gctggacctccaggacctgccggtgccagaggaatgcctggaccccaaggaccccgtggt
gataagggtgaagctggagagtctggtgagagaggacagaaggggcacagaggtttcact
ggcctgcagggtctccctggaccaccaggccaacctggagaccagggtgccactggacct
gctgggccttctggacaaagaggaccacctggacctgttggtcctgctggaaaagacggg
tcaaatggcttaccaggacccatcggaccccctggacctcgtggtcgcactggagactct
ggtcccgctggtcctcctggaaaccctggaccccctggtcctcctggtccccccggtcct
ggtattgacatgtctgccttcgctggtctgggtcaaacagaaaagtctcccgatcccctg
aggtatatgagggcagaccaggccgctgggaatctccgtcaacatgacgcagaggtcgat
gccactcttaagtccctcaacaaccagattgagaacatccgcagcccagagggatccaag
aagaaccctgcccgcacctgcagagacctgaagctctgccatcccgactggaagagcggt
gagtactggattgatcccaatcaaggctgcactgtagatgcaatcaaagttttctgcaac
atggaaactggggagtcttgtgtgaaccccaaacctgccaagatccctcgcaagaactgg
tggtccagcaagagcaaagaacgcaaacatgtctggttcggagagacaatgaacggagga
ttccatttcagttatggtgacgacagcctggcacccaacaccgcctccattcagatgact
ttcctgaggttgctgtcaacagaggcatcccaaaatctcacttaccactgtaagaacagc
gtggcctacttggatgcttcaacaagcaacctgaagaaggccgtcctgctgcaaggctcc
aacgatgtggagatcagagccgagggcaacagccgcttcacctacagcgtcatggaagac
ggctgcacgagacacacaggacagtggggtaagacaatgttcgaatacaggtcgcagaag
acctcccgtctgcccattgtggacattgcccccatggatatcggtggagcagaccaggag
tttggaattgatattgggccagtttgcttcttgtaa
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