Xiphophorus hellerii (green swordtail): 116710127
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Entry
116710127 CDS
T07363
Symbol
pdzrn3
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3 isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xhe04121
]
116710127 (pdzrn3)
Enzymes [BR:
xhe01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
116710127 (pdzrn3)
Ubiquitin system [BR:
xhe04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
116710127 (pdzrn3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-RING_UBOX
zf-C3HC4_3
zf-C3HC4_4
zf-RING_5
Sina_ZnF
zf-TRAF
Prok-RING_4
PDZ_Tricorn
zf-rbx1
CSS_CxxC
zf-RING_6
RING_XB3-XBAT31
U-box
IBR_1
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
116710127
NCBI-ProteinID:
XP_032404858
LinkDB
All DBs
Position
20:33929028..34055203
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AA seq
1052 aa
AA seq
DB search
MGFELDRFKGTVDPDFKCNLCNKVLEDPLTTPCGHVFCSGCVLPWVVQQSSCPVKCQRIS
AKELNHVLPLRNLILKLEIKCDNHARGCDAVVTLQHLAEHAETCDFSPAKCGNRGCEEVV
SARDLDAHMREACEHRAAGICEGGCGLTLTLREQKSSGHCCVRALKAQNGALQCRLLVLD
RELKKQAIRANQREKALLAQLSAVHSELQMTALKYQKKFTEYSERIDSLTKTVAFSCKED
NTKSVTAVLLRDGGSLGFNIVGGRPCADDNDGTSHEGIFVSKIVEKGPADKEGGLQIHDR
IMEVNGKDLSKATHEQAVEAFRTAKDPIMVQVLRQGPYPQLLAPITDTQVSDISTQTDIT
LQHIVALTKLPPASPPMTELEEYLLPEESPPEHTYFDPNDFLEGIQQEIEREGLEYEEVD
LYRANIRDKLGLTICYRTDDEDEAGIYISEIDPNSIAAKDGRIREGDKIIQINGVEIQNR
EDAVALLTTEGNQNISLLVARPEIQLDGGWVDDDRNDFLDDLHMDMLEQQHHQAMQFTAS
VLEQQKKHEEDGGTTDTATLLSNHHEKDSGVGRTDESTRNDESSEQENLGDDQTTTASNT
LGSCRKLTYSQDTLGSTDLPFSGESLISADYADADFLGIPVDECERFRELLELKCQMRSG
GAQGLFSLAAGGTEGQTEEGVDKELELLNEELRSIELECLNIVRAHKMQQLREQCRESWM
LHNSGFHNYNTSIDARRHELPDITELPEKSDKDSSSAYNTGESCRSTPLTLELSPDNSLR
RGAENQGAVGLSGSGVSNGKIHKPLLSPVQEAGGPRRCRVSSKDLDGELQAESKERKLGE
TGKGGRGSQPHSPYKHAHIPAHAQHYQSYMQLIQQKSAVEYAQSQMSLVSMCRDAVSPGD
HEPRMEWKVKIRSDGTRYITKRPVRDRLLRERALRIHEERSGMTTDDDAISELKMGRYWS
KEERKQHAMRAKEQKQRREFMKQSRVDCLKDQSAPEDKKEPNIIELSHKKMMKKRNKKIF
DNWMTIQELLTHGTKSPDGTRVYNSLLSVTTV
NT seq
3159 nt
NT seq
+upstream
nt +downstream
nt
atgggatttgagctggaccgcttcaaggggaccgtggacccggacttcaaatgcaacttg
tgtaacaaagtcctggaggacccactgacgactccgtgcggccacgtcttctgctccggc
tgtgtgctgccctgggtcgtccagcagagcagctgccccgtcaagtgccagcgcatctcc
gccaaggagctcaaccacgtcctgccgctgaggaacctcatcctgaagctggagatcaaa
tgcgacaatcacgccaggggctgcgacgctgtggtgacgctgcagcatctggccgagcac
gccgagacgtgcgacttctccccggccaagtgcggcaatagaggctgcgaggaggtggtg
agcgctcgggacctggacgcgcacatgcgggaggcgtgcgagcatcgggcggcggggatc
tgcgagggcggctgcgggctaacgctcacgctccgggagcagaagtcgagcggccactgc
tgcgtgagagccctgaaggcgcagaacggcgcgctgcagtgcaggctgctggtcctggac
agggagctgaagaagcaggcgatcagggccaaccagagggagaaggcgctgctggcccag
ctgtcggctgtgcacagcgagctgcagatgacggcgctcaagtaccagaagaaattcacc
gagtacagcgagaggatcgactcgctcaccaagaccgtagctttctcctgcaaggaagac
aacactaagagcgtgacagctgtcctactccgtgatggcggatctctgggttttaacatc
gtaggaggaaggccatgtgcggacgacaatgacggcacttcacatgaagggatctttgtg
tccaagattgtcgagaaaggtccagcggacaaggagggaggccttcagatccacgacaga
ataatggaggttaatgggaaggacctctcaaaagccacccatgagcaagcagtggaggca
ttccgcaccgccaaggaccccatcatggttcaagttctacgccagggtccttacccccaa
ctgcttgcccccatcacagacacccaggtgtcggacatcagcacccagaccgacatcacc
ctccagcatattgtggctctcaccaagctgcctcccgcctcacccccgatgacagagctg
gaggagtatctgctgccggaggagtctcctccagagcacacatattttgaccccaacgat
ttcctggagggcatccaacaggagatagagcgcgaggggcttgaatatgaggaggtggat
ctgtaccgagcaaacatccgagacaaactgggcctgaccatctgttacaggactgatgac
gaggatgaggctgggatctacattagcgagatcgatccaaacagcatcgctgcaaaggat
ggtagaattagagaaggggacaaaatcatacagatcaatggtgttgagatccaaaatcga
gaggatgcagtagcgctgttgaccactgagggcaaccagaacatctctctgctggtggcc
cgaccagagattcagctggacgggggctgggtggatgatgataggaacgacttcctggat
gacctccacatggacatgctggagcagcaacaccatcaggccatgcagttcactgccagc
gtgctagagcagcagaagaagcatgaggaggacgggggcaccacagacacggccacgttg
ctctccaaccaccacgaaaaggacagcggtgttggccgcacagacgagagcacccggaac
gatgagagctctgagcaagagaacctcggtgacgatcagacgaccacagcttccaacacg
ctgggcagctgcaggaaactgacctatagccaggacaccctcggcagcactgacctgccc
ttcagcggcgagtcgctcatctctgcagactatgccgacgccgacttcctgggcattcca
gtcgacgagtgtgagcgcttccgagagctcctggaactaaagtgtcagatgaggagtggc
ggcgctcagggcctgttcagcctggccgctgggggcactgagggtcagacagaggagggc
gtggataaggagctggagttgctcaacgaggagctgcgcagcatcgagctggagtgcctg
aacatcgtccgtgcccacaagatgcagcagctgagggagcagtgccgagaatcatggatg
ctccacaacagtggcttccacaactacaacaccagcatagacgctcgccgccacgaactg
ccggacatcacagagctgcctgagaaatcagacaaggatagctcaagtgcctacaacacc
ggcgagagctgccgcagcactcctctcactctagaactgtctccggataactccctccgt
cgtggagcagagaatcagggcgcagtcggactgtctggatctggagtctcaaatggcaag
attcacaagcccctcttgtccccggtgcaggaagccggaggccccaggcggtgcagagtc
tcctctaaagacctggacggagagctacaagccgagagcaaagagaggaagcttggggag
acgggtaagggtggacgaggctctcaaccacattccccttacaagcacgctcacatcccg
gcccacgcccagcactaccaaagctacatgcagctgatccagcagaaatctgcagtggaa
tatgcccagagtcagatgagtctggtcagcatgtgccgggatgcagtcagccccggtgac
catgagcccaggatggagtggaaggtaaagatccgcagtgacggcacgcggtacatcacg
aagcggccggtccgggacaggctgctgagggagcgtgctctccgtatccatgaagagcgc
agcggcatgaccacggatgacgacgccatcagcgaactgaagatgggccgctactggagc
aaggaggagcggaagcagcacgccatgcgggccaaggagcagaagcagcgccgcgagttc
atgaagcagagccgagtggactgtctgaaggaccagagtgctcccgaggacaagaaggag
ccaaacatcatcgaactcagccacaaaaagatgatgaaaaagagaaataagaaaattttt
gacaactggatgaccatccaggaactgctgacccacggcaccaagtcacctgatgggact
agggtttataactcacttctgtctgtgaccacggtgtga
DBGET
integrated database retrieval system
